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2JG3
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
MTAQI WITH BAZ
Authors
:
G. Pljevaljcic, A. J. Scheidig, E. Weinhold
Date
:
07 Feb 07 (Deposition) - 07 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Transferase-Dna Complex, Dna, Transferase, Base Flipping, Restriction System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Pljevaljcic, F. Schmidt, A. J. Scheidig, R. Lurz, E. Weinhold
Quantitative Labeling Of Long Plasmid Dna With Nanometer Precision.
Chembiochem V. 8 1516 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: N6-METHYL-DEOXY-ADENOSINE-5'-MONOP... (6MAa)
1b: N6-METHYL-DEOXY-ADENOSINE-5'-MONOP... (6MAb)
2a: 5'-DEOXY-5'-(ETHYLAMINO)-8-{[4-({5... (BA2a)
2b: 5'-DEOXY-5'-(ETHYLAMINO)-8-{[4-({5... (BA2b)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6MA
2
Mod. Nucleotide
N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE
2
BA2
2
Ligand/Ion
5'-DEOXY-5'-(ETHYLAMINO)-8-{[4-({5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}AMINO)BUTYL]AMINO}ADENOSINE
3
GOL
2
Ligand/Ion
GLYCEROL
4
K
2
Ligand/Ion
POTASSIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
BA2 A:1415 , DA B:6
BINDING SITE FOR RESIDUE K B1011
2
AC2
SOFTWARE
PRO D:107 , BA2 D:1416 , DA E:6
BINDING SITE FOR RESIDUE K D1415
3
AC3
SOFTWARE
ALA A:47 , GLU A:71 , ILE A:72 , ASP A:73 , ALA A:76 , ALA A:88 , ASP A:89 , PHE A:90 , ASN A:105 , PRO A:107 , PHE A:146 , GOL A:1416 , HOH A:2037 , HOH A:2286 , DA B:6 , K B:1011
BINDING SITE FOR RESIDUE BA2 A1415
4
AC4
SOFTWARE
ILE A:72 , ASP A:89 , VAL A:121 , TYR A:129 , BA2 A:1415 , HOH A:2287
BINDING SITE FOR RESIDUE GOL A1416
5
AC5
SOFTWARE
LYS A:139 , ASP A:173 , HOH A:2114 , DT B:2 , DT B:3 , HOH B:2047 , HOH B:2048 , DA C:19 , DC C:20
BINDING SITE FOR RESIDUE GOL B1012
6
AC6
SOFTWARE
ALA D:47 , GLU D:71 , ILE D:72 , ALA D:76 , ALA D:88 , ASP D:89 , PHE D:90 , PHE D:146 , K D:1415 , HOH D:2259 , DA E:6
BINDING SITE FOR RESIDUE BA2 D1416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: N6_MTASE (A:102-108,D:102-108)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
N6_MTASE
PS00092
N-6 Adenine-specific DNA methylases signature.
MTTA_THEAQ
102-108
2
A:102-108
D:102-108
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2jg3a2 (A:244-414)
1b: SCOP_d2jg3d2 (D:244-414)
2a: SCOP_d2jg3a1 (A:23-243)
2b: SCOP_d2jg3d1 (D:23-243)
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(
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA methylase specificity domain
(14)
Superfamily
:
DNA methylase specificity domain
(14)
Family
:
TaqI C-terminal domain-like
(12)
Protein domain
:
automated matches
(1)
Thermus aquaticus [TaxId: 271]
(1)
1a
d2jg3a2
A:244-414
1b
d2jg3d2
D:244-414
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
DNA methylase TaqI, N-terminal domain
(12)
Protein domain
:
automated matches
(1)
Thermus aquaticus [TaxId: 271]
(1)
2a
d2jg3a1
A:23-243
2b
d2jg3d1
D:23-243
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2jg3A01 (A:23-243)
1b: CATH_2jg3D01 (D:23-243)
2a: CATH_2jg3A02 (A:244-412)
2b: CATH_2jg3D02 (D:244-412)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Thermus aquaticus. Organism_taxid: 271. Strain: yt1.
(1)
1a
2jg3A01
A:23-243
1b
2jg3D01
D:23-243
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2
(12)
Homologous Superfamily
:
Adenine-n6-DNA-methyltransferase Taqi, Chain A, domain 2
(12)
Thermus aquaticus. Organism_taxid: 271. Strain: yt1.
(1)
2a
2jg3A02
A:244-412
2b
2jg3D02
D:244-412
[
close CATH info
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Methyltransf_26_2jg3D01 (D:40-166)
1b: PFAM_Methyltransf_26_2jg3D02 (D:40-166)
2a: PFAM_TaqI_C_2jg3D03 (D:290-405)
2b: PFAM_TaqI_C_2jg3D04 (D:290-405)
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Clans
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)
Organisms
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Methyltransf_26
(3)
Thermus aquaticus
(3)
1a
Methyltransf_26-2jg3D01
D:40-166
1b
Methyltransf_26-2jg3D02
D:40-166
Clan
:
TRD
(7)
Family
:
TaqI_C
(3)
Thermus aquaticus
(3)
2a
TaqI_C-2jg3D03
D:290-405
2b
TaqI_C-2jg3D04
D:290-405
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (167 KB)
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