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2JFY
Asym. Unit
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Asym.Unit (92 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HELICOBACTER PYLORI GLUTAMATE RACEMASE IN COMPLEX WITH D-GLUTAMATE
Authors
:
T. Lundqvist
Date
:
06 Feb 07 (Deposition) - 19 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Wall, Isomerase, Cell Shape, Glutamate Racemase, Peptidoglycan Synthesis, Peptidoglycan Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Lundqvist, S. L. Fisher, G. Kern, R. H. A. Folmer, Y. Xue, D. T. Newton, T. A. Keating, R. A. Alm, B. L. M. De Jonge
Exploitation Of Structural And Regulatory Diversity In Glutamate Racemases.
Nature V. 447 817 2007
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Hetero Components
(1, 2)
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1a: D-GLUTAMIC ACID (DGLa)
1b: D-GLUTAMIC ACID (DGLb)
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No.
Name
Count
Type
Full Name
1
DGL
2
Ligand/Ion
D-GLUTAMIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:7 , SER A:8 , PRO A:38 , TYR A:39 , GLY A:40 , CYS A:70 , ASN A:71 , THR A:72 , THR A:116 , CYS A:181 , THR A:182 , HIS A:183 , HOH A:2094 , HOH A:2136
BINDING SITE FOR RESIDUE DGL A1256
2
AC2
SOFTWARE
ASP B:7 , SER B:8 , PRO B:38 , TYR B:39 , GLY B:40 , CYS B:70 , ASN B:71 , THR B:72 , THR B:116 , CYS B:181 , THR B:182 , HIS B:183 , HOH B:2098 , HOH B:2211
BINDING SITE FOR RESIDUE DGL B1256
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PROSITE Patterns/Profiles
(2, 4)
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1: ASP_GLU_RACEMASE_1 (A:67-75,B:67-75)
2: ASP_GLU_RACEMASE_2 (A:177-187,B:177-187)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_GLU_RACEMASE_1
PS00923
Aspartate and glutamate racemases signature 1.
MURI_HELPJ
67-75
2
A:67-75
B:67-75
2
ASP_GLU_RACEMASE_2
PS00924
Aspartate and glutamate racemases signature 2.
MURI_HELPJ
177-187
2
A:177-187
B:177-187
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Exons
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Asp_Glu_race_2jfyB01 (B:3-219)
1b: PFAM_Asp_Glu_race_2jfyB02 (B:3-219)
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Clan
:
Asp-glut_race
(23)
Family
:
Asp_Glu_race
(23)
Helicobacter pylori J99 (Campylobacter pylori J99)
(3)
1a
Asp_Glu_race-2jfyB01
B:3-219
1b
Asp_Glu_race-2jfyB02
B:3-219
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