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2JFL
Biol. Unit 1
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Asym.Unit (58 KB)
Biol.Unit 1 (100 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN STE20-LIKE KINASE ( DIPHOSPHORYLATED FORM) BOUND TO 5- AMINO-3-((4-( AMINOSULFONYL)PHENYL)AMINO)-N-(2,6- DIFLUOROPHENYL)-1H-1,2, 4-TRIAZOLE-1-CARBOTHIOAMIDE
Authors
:
A. C. W. Pike, P. Rellos, O. Fedorov, T. Keates, E. Salah, P. Savitsky, E. Papagrigoriou, G. Bunkoczi, F. Von Delft, C. H. Arrowsmith, A. Edw J. Weigelt, M. Sundstrom, S. Knapp
Date
:
02 Feb 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Atp-Binding, Phosphorylation, Muscle Development, Kinase, Apoptosis, Germinal Centre Kinase, Serine- Threonine Kinase 2, Nucleotide-Binding, Serine-Threonine-Protein Kinase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. C. W. Pike, P. Rellos, F. H. Niesen, A. Turnbull, A. W. Oliver, S. A. Parker, B. E. Turk, L. H. Pearl, S. Knapp
Activation Segment Dimerization: A Mechanism For Kinase Autophosphorylation Of Non-Consensus Sites.
Embo J. V. 27 704 2008
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 5-AMINO-3-{[4-(AMINOSULFONYL)PHENY... (DKIa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: THIOCYANATE ION (SCNa)
5a: PHOSPHOSERINE (SEPa)
6a: PHOSPHOTHREONINE (TPOa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DKI
2
Ligand/Ion
5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
3
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
4
SCN
2
Ligand/Ion
THIOCYANATE ION
5
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
6
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:242
BINDING SITE FOR RESIDUE SCN A1315
2
AC2
SOFTWARE
DKI A:1309
BINDING SITE FOR RESIDUE CL A1316
3
AC3
SOFTWARE
LEU A:40 , VAL A:48 , ALA A:61 , ILE A:108 , GLU A:109 , PHE A:110 , CYS A:111 , GLY A:114 , GLY A:159 , ASN A:160 , LEU A:162 , CL A:1316 , HOH A:2145
BINDING SITE FOR RESIDUE DKI A1309
4
AC4
SOFTWARE
HIS A:147 , PRO A:211 , TYR A:214 , THR A:282 , THR A:283 , EDO A:1312
BINDING SITE FOR RESIDUE EDO A1310
5
AC5
SOFTWARE
VAL A:134 , LYS A:137 , GLN A:138 , VAL A:294 , SER A:296 , ASN A:297 , HOH A:2146
BINDING SITE FOR RESIDUE EDO A1311
6
AC6
SOFTWARE
HIS A:147 , LYS A:150 , ASP A:209 , EDO A:1310
BINDING SITE FOR RESIDUE EDO A1312
7
AC7
SOFTWARE
PRO A:89 , ASN A:90 , HOH A:2048
BINDING SITE FOR RESIDUE EDO A1313
8
AC8
SOFTWARE
ASP A:155 , LYS A:157 , ILE A:191 , GLY A:192 , THR A:193 , PRO A:194
BINDING SITE FOR RESIDUE EDO A1314
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:40-63)
2: PROTEIN_KINASE_ST (A:151-163)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SLK_HUMAN
40-63
2
A:40-63
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
SLK_HUMAN
151-163
2
A:151-163
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jfla_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
STE20-like serine/threonine-protein kinase, SLK
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2jfla_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2jflA01 (A:21-110)
2a: CATH_2jflA02 (A:111-308)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2jflA01
A:21-110
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2jflA02
A:111-308
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_2jflA01 (A:34-292)
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Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2jflA01
A:34-292
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Chain A
Asymmetric Unit 1
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