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Asym. Unit
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Asym.Unit (58 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN STE20-LIKE KINASE ( DIPHOSPHORYLATED FORM) BOUND TO 5- AMINO-3-((4-( AMINOSULFONYL)PHENYL)AMINO)-N-(2,6- DIFLUOROPHENYL)-1H-1,2, 4-TRIAZOLE-1-CARBOTHIOAMIDE
Authors
:
A. C. W. Pike, P. Rellos, O. Fedorov, T. Keates, E. Salah, P. Savitsky, E. Papagrigoriou, G. Bunkoczi, F. Von Delft, C. H. Arrowsmith, A. Edw J. Weigelt, M. Sundstrom, S. Knapp
Date
:
02 Feb 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Atp-Binding, Phosphorylation, Muscle Development, Kinase, Apoptosis, Germinal Centre Kinase, Serine- Threonine Kinase 2, Nucleotide-Binding, Serine-Threonine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. W. Pike, P. Rellos, F. H. Niesen, A. Turnbull, A. W. Oliver, S. A. Parker, B. E. Turk, L. H. Pearl, S. Knapp
Activation Segment Dimerization: A Mechanism For Kinase Autophosphorylation Of Non-Consensus Sites.
Embo J. V. 27 704 2008
[
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 5-AMINO-3-{[4-(AMINOSULFONYL)PHENY... (DKIa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: THIOCYANATE ION (SCNa)
5a: PHOSPHOSERINE (SEPa)
6a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DKI
1
Ligand/Ion
5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
SCN
1
Ligand/Ion
THIOCYANATE ION
5
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
6
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:242
BINDING SITE FOR RESIDUE SCN A1315
2
AC2
SOFTWARE
DKI A:1309
BINDING SITE FOR RESIDUE CL A1316
3
AC3
SOFTWARE
LEU A:40 , VAL A:48 , ALA A:61 , ILE A:108 , GLU A:109 , PHE A:110 , CYS A:111 , GLY A:114 , GLY A:159 , ASN A:160 , LEU A:162 , CL A:1316 , HOH A:2145
BINDING SITE FOR RESIDUE DKI A1309
4
AC4
SOFTWARE
HIS A:147 , PRO A:211 , TYR A:214 , THR A:282 , THR A:283 , EDO A:1312
BINDING SITE FOR RESIDUE EDO A1310
5
AC5
SOFTWARE
VAL A:134 , LYS A:137 , GLN A:138 , VAL A:294 , SER A:296 , ASN A:297 , HOH A:2146
BINDING SITE FOR RESIDUE EDO A1311
6
AC6
SOFTWARE
HIS A:147 , LYS A:150 , ASP A:209 , EDO A:1310
BINDING SITE FOR RESIDUE EDO A1312
7
AC7
SOFTWARE
PRO A:89 , ASN A:90 , HOH A:2048
BINDING SITE FOR RESIDUE EDO A1313
8
AC8
SOFTWARE
ASP A:155 , LYS A:157 , ILE A:191 , GLY A:192 , THR A:193 , PRO A:194
BINDING SITE FOR RESIDUE EDO A1314
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:40-63)
2: PROTEIN_KINASE_ST (A:151-163)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SLK_HUMAN
40-63
1
A:40-63
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
SLK_HUMAN
151-163
1
A:151-163
[
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (A:21-50)
Exon 1.2 (A:51-105)
Exon 1.3 (A:106-122)
Exon 1.4 (A:122-172)
Exon 1.5 (A:172-196)
Exon 1.6 (A:196-261)
Exon 1.7 (A:261-288)
Exon 1.8 (A:289-308)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000369755
1
ENSE00001319269
chr10:
105726959-105727653
695
SLK_HUMAN
1-50
50
1
A:21-50
30
1.2
ENST00000369755
2
ENSE00001271743
chr10:
105750433-105750597
165
SLK_HUMAN
51-105
55
1
A:51-105
55
1.3
ENST00000369755
3
ENSE00000515224
chr10:
105752356-105752404
49
SLK_HUMAN
106-122
17
1
A:106-122
17
1.4
ENST00000369755
4
ENSE00000515225
chr10:
105752742-105752891
150
SLK_HUMAN
122-172
51
1
A:122-172
51
1.5
ENST00000369755
5
ENSE00000723471
chr10:
105758657-105758729
73
SLK_HUMAN
172-196
25
1
A:172-196
25
1.6
ENST00000369755
6
ENSE00000723472
chr10:
105758877-105759071
195
SLK_HUMAN
196-261
66
1
A:196-261
66
1.7
ENST00000369755
7
ENSE00000723473
chr10:
105759625-105759706
82
SLK_HUMAN
261-288
28
1
A:261-288
28
1.8
ENST00000369755
8
ENSE00000723474
chr10:
105761202-105761330
129
SLK_HUMAN
289-331
43
1
A:289-308
20
1.9
ENST00000369755
9
ENSE00000723475
chr10:
105761930-105763285
1356
SLK_HUMAN
332-783
452
0
-
-
1.10
ENST00000369755
10
ENSE00000515231
chr10:
105765319-105765449
131
SLK_HUMAN
784-827
44
0
-
-
1.11
ENST00000369755
11
ENSE00000515232
chr10:
105765670-105765793
124
SLK_HUMAN
827-868
42
0
-
-
1.12a
ENST00000369755
12a
ENSE00001271701
chr10:
105767935-105768114
180
SLK_HUMAN
869-928
60
0
-
-
1.13
ENST00000369755
13
ENSE00000987678
chr10:
105770574-105770666
93
SLK_HUMAN
929-959
31
0
-
-
1.14
ENST00000369755
14
ENSE00001271696
chr10:
105777918-105778047
130
SLK_HUMAN
960-1003
44
0
-
-
1.15a
ENST00000369755
15a
ENSE00001271692
chr10:
105778542-105778666
125
SLK_HUMAN
1003-1044
42
0
-
-
1.16
ENST00000369755
16
ENSE00000723483
chr10:
105779492-105779680
189
SLK_HUMAN
1045-1107
63
0
-
-
1.17
ENST00000369755
17
ENSE00001271679
chr10:
105780246-105780371
126
SLK_HUMAN
1108-1149
42
0
-
-
1.18
ENST00000369755
18
ENSE00001271668
chr10:
105781378-105781491
114
SLK_HUMAN
1150-1187
38
0
-
-
1.19
ENST00000369755
19
ENSE00001450811
chr10:
105785332-105788991
3660
SLK_HUMAN
1188-1235
48
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jfla_ (A:)
View:
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Classes
(
)
(
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Folds
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Superfamilies
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
STE20-like serine/threonine-protein kinase, SLK
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2jfla_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2jflA01 (A:21-110)
2a: CATH_2jflA02 (A:111-308)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2jflA01
A:21-110
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2jflA02
A:111-308
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_2jflA01 (A:34-292)
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Clans
(
)
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)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2jflA01
A:34-292
[
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