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2JF6
Biol. Unit 1
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Asym.Unit (162 KB)
Biol.Unit 1 (608 KB)
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(1)
Title
:
STRUCTURE OF INACTIVE MUTANT OF STRICTOSIDINE GLUCOSIDASE IN COMPLEX WITH STRICTOSIDINE
Authors
:
L. Barleben, S. Panjikar, M. Ruppert, J. Koepke, J. Stockigt
Date
:
26 Jan 07 (Deposition) - 05 Feb 08 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.82
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Alkaloid, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
L. Barleben, S. Panjikar, M. Ruppert, J. Koepke, J. Stockigt
Molecular Architecture Of Strictosidine Glucosidase - The Gateway To The Biosynthesis Of The Monoterpenoid Indole Alkaloid Family
Plant Cell V. 19 2886 2007
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-... (S55a)
1b: METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-... (S55b)
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No.
Name
Count
Type
Full Name
1
S55
8
Ligand/Ion
METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-[(1S)-2,3,4,9-TETRAHYDRO-1H-BETA-CARBOLIN-1-YLMETHYL]-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:57 , HIS A:161 , ASN A:206 , GLU A:207 , THR A:210 , PHE A:221 , ASN A:273 , MET A:297 , ASN A:343 , TYR A:345 , GLY A:386 , TRP A:388 , GLU A:416 , TRP A:465 , GLU A:472 , TRP A:473 , TYR A:481
BINDING SITE FOR RESIDUE S55 A1509
2
AC2
SOFTWARE
GLN B:57 , HIS B:161 , TRP B:162 , ASN B:206 , GLU B:207 , THR B:210 , PHE B:221 , MET B:297 , TYR B:345 , GLY B:386 , TRP B:388 , GLU B:416 , TRP B:465 , GLU B:472 , TRP B:473 , TYR B:481 , HOH B:2035
BINDING SITE FOR RESIDUE S55 B1509
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F1_2 (A:47-61,B:47-61)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F1_2
PS00653
Glycosyl hydrolases family 1 N-terminal signature.
SG1_RAUSE
47-61
8
A:47-61
B:47-61
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2jf6a_ (A:)
1b: SCOP_d2jf6b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Rauvolfia serpentina [TaxId: 4060]
(12)
1a
d2jf6a_
A:
1b
d2jf6b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jf6A00 (A:37-508)
1b: CATH_2jf6B00 (B:37-508)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Serpentwood (Rauvolfia serpentina)
(2)
1a
2jf6A00
A:37-508
1b
2jf6B00
B:37-508
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Pfam Domains
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Asym.Unit (162 KB)
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