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2JF3
Biol. Unit 1
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Asym.Unit (45 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
NUCLEOTIDE SUBSTRATE BINDING BY UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE
Authors
:
V. Ulaganathan, L. Buetow, W. N. Hunter
Date
:
25 Jan 07 (Deposition) - 24 Apr 07 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Lipid A Biosynthesis, Transferase, Acyltransferase, Lipid Synthesis
(Keyword Search:
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]
)
Reference
:
V. Ulaganathan, L. Buetow, W. N. Hunter
Nucleotide Substrate Recognition By Udp-N- Acetylglucosamine Acyltransferase (Lpxa) In The First Step Of Lipid A Biosynthesis.
J. Mol. Biol. V. 369 305 2007
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
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Label:
No.
Name
Count
Type
Full Name
1
UD1
3
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:74 , LEU A:75 , LYS A:76 , HIS A:125 , HIS A:144 , ILE A:152 , GLN A:161 , ASN A:198 , GLU A:200 , ARG A:204 , ARG A:205 , HOH A:2030
BINDING SITE FOR RESIDUE UD1 A1263
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_LPXA_ECOLI_001 (G189S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LPXA_ECOLI_001
*
G
189
S
LPXA_ECOLI
---
---
A
G
189
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:153-181)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
LPXA_ECOLI
20-48
153-181
6
A:20-48
A:153-181
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jf3a_ (A:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
UDP N-acetylglucosamine acyltransferase
(7)
Protein domain
:
UDP N-acetylglucosamine acyltransferase
(7)
Escherichia coli, gene lpxA [TaxId: 562]
(6)
1a
d2jf3a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2jf3A02 (A:197-262)
2a: CATH_2jf3A01 (A:1-196)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Udp N-acetylglucosamine O-acyltransferase; Domain 2
(10)
Homologous Superfamily
:
[code=1.20.1180.10, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(2)
1a
2jf3A02
A:197-262
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Escherichia coli. Organism_taxid: 562.
(3)
2a
2jf3A01
A:1-196
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Acetyltransf_11_2jf3A01 (A:180-262)
2a: PFAM_Hexapep_2jf3A02 (A:108-143)
2b: PFAM_Hexapep_2jf3A03 (A:108-143)
2c: PFAM_Hexapep_2jf3A04 (A:108-143)
2d: PFAM_Hexapep_2jf3A05 (A:108-143)
2e: PFAM_Hexapep_2jf3A06 (A:108-143)
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Clans
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Organisms
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)
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)
Clan
:
no clan defined [family: Acetyltransf_11]
(6)
Family
:
Acetyltransf_11
(6)
Escherichia coli (strain K12)
(5)
1a
Acetyltransf_11-2jf3A01
A:180-262
Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Escherichia coli (strain K12)
(13)
2a
Hexapep-2jf3A02
A:108-143
2b
Hexapep-2jf3A03
A:108-143
2c
Hexapep-2jf3A04
A:108-143
2d
Hexapep-2jf3A05
A:108-143
2e
Hexapep-2jf3A06
A:108-143
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