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2JEV
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SPERMINE,SPERMIDINE ACETYLTRANSFERASE IN COMPLEX WITH A BISUBSTRATE ANALOG (N1-ACETYLSPERMINE-S-COA).
Authors
:
S. S. Hegde, J. Chandler, M. W. Vetting, M. Yu, J. S. Blanchard
Date
:
23 Jan 07 (Deposition) - 05 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Acyltransferase, Acetyltransferase, Gcn5 Related N- Acetyltransferase, Polyamine Biosynthesis, Gnat, Spermine, Spermidine, Transferase, Bisubstrate
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. S. Hegde, J. Chandler, M. W. Vetting, M. Yu, J. S. Blanchard
Mechanistic And Structural Analysis Of Human Spermidine/Spermine N(1)-Acetyltransferase.
Biochemistry V. 46 7187 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (3R)-27-AMINO-3-HYDROXY-2,2-DIMETH... (NHQa)
1b: (3R)-27-AMINO-3-HYDROXY-2,2-DIMETH... (NHQb)
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No.
Name
Count
Type
Full Name
1
NHQ
2
Ligand/Ion
(3R)-27-AMINO-3-HYDROXY-2,2-DIMETHYL-4,8,14-TRIOXO-12-THIA-5,9,15,19,24-PENTAAZAHEPTACOS-1-YL [(2S,3R,4S,5S)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:27 , GLU A:28 , GLU A:32 , GLU A:92 , ASP A:93 , PHE A:94 , PHE A:95 , VAL A:96 , ARG A:101 , GLY A:102 , PHE A:103 , GLY A:104 , ILE A:105 , GLY A:106 , SER A:107 , LEU A:128 , SER A:136 , PHE A:139 , TYR A:140 , HOH A:2021 , HOH A:2028 , ASP B:82 , TRP B:84 , TRP B:154 , NHQ B:1171
BINDING SITE FOR RESIDUE NHQ A1171
2
AC2
SOFTWARE
ASP A:82 , TRP A:84 , TRP A:154 , NHQ A:1171 , TYR B:27 , GLU B:32 , GLU B:92 , ASP B:93 , PHE B:94 , PHE B:95 , VAL B:96 , ARG B:101 , GLY B:102 , PHE B:103 , GLY B:104 , ILE B:105 , GLY B:106 , SER B:107 , LEU B:128 , SER B:136 , PHE B:139 , TYR B:140 , HOH B:2031 , HOH B:2039
BINDING SITE FOR RESIDUE NHQ B1171
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GNAT (A:4-170,B:4-170)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GNAT
PS51186
Gcn5-related N-acetyltransferase (GNAT) domain profile.
SAT1_HUMAN
4-171
2
A:4-170
B:4-170
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:2-22 | B:2-22)
Exon 1.2c (A:23-40 | B:23-40)
Exon 1.2e (A:40-68 | B:40-68)
Exon 1.3c (A:68-102 | B:68-102)
Exon 1.3f (A:102-115 | B:102-115)
Exon 1.4f (A:116-170 | B:116-170)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2c
3: Boundary 1.2c/1.2e
4: Boundary 1.2e/1.3c
5: Boundary 1.3c/1.3f
6: Boundary 1.3f/1.4f
7: Boundary 1.4f/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000379270
1a
ENSE00001480358
X:23801290-23801534
245
SAT1_HUMAN
1-22
22
2
A:2-22
B:2-22
21
21
1.2c
ENST00000379270
2c
ENSE00000893299
X:23801775-23801826
52
SAT1_HUMAN
23-40
18
2
A:23-40
B:23-40
18
18
1.2e
ENST00000379270
2e
ENSE00001330300
X:23801917-23802000
84
SAT1_HUMAN
40-68
29
2
A:40-68
B:40-68
29
29
1.3c
ENST00000379270
3c
ENSE00001292529
X:23803445-23803546
102
SAT1_HUMAN
68-102
35
2
A:68-102
B:68-102
35
35
1.3f
ENST00000379270
3f
ENSE00000893296
X:23803637-23803677
41
SAT1_HUMAN
102-115
14
2
A:102-115
B:102-115
14
14
1.4f
ENST00000379270
4f
ENSE00001917283
X:23803803-23804343
541
SAT1_HUMAN
116-171
56
2
A:116-170
B:116-170
55
55
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2jeva_ (A:)
1b: SCOP_d2jevb_ (B:)
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Protein Domains
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)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Superfamily
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Family
:
N-acetyl transferase, NAT
(154)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2jeva_
A:
1b
d2jevb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Acetyltransf_1_2jevB01 (B:65-146)
1b: PFAM_Acetyltransf_1_2jevB02 (B:65-146)
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Clan
:
Acetyltrans
(109)
Family
:
Acetyltransf_1
(58)
Homo sapiens (Human)
(6)
1a
Acetyltransf_1-2jevB01
B:65-146
1b
Acetyltransf_1-2jevB02
B:65-146
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Asymmetric Unit 1
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