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2JE8
Biol. Unit 1
Info
Asym.Unit (326 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
STRUCTURE OF A BETA-MANNOSIDASE FROM BACTEROIDES THETAIOTAOMICRON
Authors
:
L. E. Tailford, V. A. Money, N. L. Smith, C. Dumon, G. J. Davies, H. J. Gilbert
Date
:
16 Jan 07 (Deposition) - 06 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Mannosidase, Glycoside Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. E. Tailford, V. A. Money, N. L. Smith, C. Dumon, G. J. Davies, H. J. Gilbert
Mannose Foraging By Bacteroides Thetaiotaomicron: Structure And Specificity Of The Beta-Mannosidase, Btman2A.
J. Biol. Chem. V. 282 11291 2007
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pa)
1b: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pb)
1c: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
B3P
1
Ligand/Ion
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC8 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:284
BINDING SITE FOR RESIDUE CL A1869
2
AC2
SOFTWARE
ILE A:107 , LYS A:142 , HOH A:2145 , HOH A:2202 , HOH A:2298
BINDING SITE FOR RESIDUE CL A1870
3
AC3
SOFTWARE
TYR A:167 , ASN A:173 , TYR A:174 , HIS A:184
BINDING SITE FOR RESIDUE CL A1871
4
AC5
SOFTWARE
TRP A:198 , ASP A:199 , TRP A:395 , ASN A:461 , GLU A:462 , TRP A:519 , TRP A:533 , TYR A:537 , GLU A:555 , TRP A:645 , HOH A:2540 , HOH A:2864 , HOH A:2865
BINDING SITE FOR RESIDUE B3P A1865
5
AC8
SOFTWARE
ILE A:328 , GLY A:329 , ARG A:331 , ARG A:449 , ASN A:450 , ALA A:452 , ARG A:507 , HOH A:2314 , HOH A:2319
BINDING SITE FOR RESIDUE GOL A1866
6
AC9
SOFTWARE
GLN A:365 , ARG A:376 , ASN A:648 , ASP A:649 , ILE A:659 , ASP A:660 , TYR A:661 , HOH A:2457
BINDING SITE FOR RESIDUE GOL A1867
7
BC1
SOFTWARE
TYR A:347 , HOH A:2713 , HOH A:2867 , HOH A:2869 , HOH A:2870
BINDING SITE FOR RESIDUE GOL A1868
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d2je8a4 (A:28-219)
1b: SCOP_d2je8b4 (B:27-219)
2a: SCOP_d2je8a1 (A:220-330)
2b: SCOP_d2je8a2 (A:784-864)
2c: SCOP_d2je8a3 (A:679-783)
2d: SCOP_d2je8b1 (B:220-330)
2e: SCOP_d2je8b2 (B:784-867)
2f: SCOP_d2je8b3 (B:679-783)
3a: SCOP_d2je8a5 (A:331-678)
3b: SCOP_d2je8b5 (B:331-678)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
beta-Galactosidase/glucuronidase, N-terminal domain
(49)
Protein domain
:
Beta-mannosidase
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
1a
d2je8a4
A:28-219
1b
d2je8b4
B:27-219
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
beta-Galactosidase/glucuronidase domain
(49)
Protein domain
:
Beta-mannosidase, domains 2, 4 and 5
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
2a
d2je8a1
A:220-330
2b
d2je8a2
A:784-864
2c
d2je8a3
A:679-783
2d
d2je8b1
B:220-330
2e
d2je8b2
B:784-867
2f
d2je8b3
B:679-783
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Five-domain beta-mannosidase, domain 3
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
3a
d2je8a5
A:331-678
3b
d2je8b5
B:331-678
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_2_N_2je8B01 (B:28-219)
1b: PFAM_Glyco_hydro_2_N_2je8B02 (B:28-219)
2a: PFAM_Glyco_hydro_2_C_2je8B03 (B:345-478)
2b: PFAM_Glyco_hydro_2_C_2je8B04 (B:345-478)
3a: PFAM_Glyco_hydro_2_2je8B05 (B:221-331)
3b: PFAM_Glyco_hydro_2_2je8B06 (B:221-331)
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Clans
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)
Clan
:
GBD
(153)
Family
:
Glyco_hydro_2_N
(32)
Bacteroides thetaiotaomicron
(9)
1a
Glyco_hydro_2_N-2je8B01
B:28-219
1b
Glyco_hydro_2_N-2je8B02
B:28-219
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_2_C
(27)
Bacteroides thetaiotaomicron
(9)
2a
Glyco_hydro_2_C-2je8B03
B:345-478
2b
Glyco_hydro_2_C-2je8B04
B:345-478
Clan
:
no clan defined [family: Glyco_hydro_2]
(31)
Family
:
Glyco_hydro_2
(31)
Bacteroides thetaiotaomicron
(9)
3a
Glyco_hydro_2-2je8B05
B:221-331
3b
Glyco_hydro_2-2je8B06
B:221-331
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Asymmetric Unit 1
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Asym.Unit (326 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (166 KB)
Header - Biol.Unit 2
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