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2JDP
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
MUTANT (S23A) OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH METHYL-A-L-FUCOPYRANOSIDE
Authors
:
J. Adam, M. Pokorna, C. Sabin, E. P. Mitchell, A. Imberty, M. Wimmerova
Date
:
11 Jan 07 (Deposition) - 12 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lectin, Glycomimetic, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Adam, M. Pokorna, C. Sabin, E. P. Mitchell, A. Imberty, M. Wimmerova
Engineering Of Pa-Iil Lectin From Pseudomonas Aeruginosa - Unravelling The Role Of The Specificity Loop For Sugar Preference.
Bmc Struct. Biol. V. 7 36 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-L-METHYL-FUCOSE (MFUa)
2b: ALPHA-L-METHYL-FUCOSE (MFUb)
2c: ALPHA-L-METHYL-FUCOSE (MFUc)
2d: ALPHA-L-METHYL-FUCOSE (MFUd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MFU
4
Ligand/Ion
ALPHA-L-METHYL-FUCOSE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , SER A:22 , ALA A:23 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:1116 , CA A:1117 , HOH A:2148 , GLY B:114
BINDING SITE FOR RESIDUE MFU A1115
02
AC2
SOFTWARE
GLY A:114 , ASN B:21 , SER B:22 , ALA B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:1116 , CA B:1117 , HOH B:2137
BINDING SITE FOR RESIDUE MFU B1115
03
AC3
SOFTWARE
ASN C:21 , SER C:22 , ALA C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:1116 , CA C:1117 , GLY D:114
BINDING SITE FOR RESIDUE MFU C1115
04
AC4
SOFTWARE
ARG B:72 , GLY C:114 , ASN D:21 , SER D:22 , ALA D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:1116 , CA D:1117
BINDING SITE FOR RESIDUE MFU D1115
05
AC5
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , MFU A:1115 , GLY B:114
BINDING SITE FOR RESIDUE CA A1116
06
AC6
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , MFU A:1115
BINDING SITE FOR RESIDUE CA A1117
07
AC7
SOFTWARE
GLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , MFU B:1115
BINDING SITE FOR RESIDUE CA B1116
08
AC8
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , MFU B:1115
BINDING SITE FOR RESIDUE CA B1117
09
AC9
SOFTWARE
ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , MFU C:1115 , GLY D:114
BINDING SITE FOR RESIDUE CA C1116
10
BC1
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , MFU C:1115
BINDING SITE FOR RESIDUE CA C1117
11
BC2
SOFTWARE
GLY C:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , MFU D:1115
BINDING SITE FOR RESIDUE CA D1116
12
BC3
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , MFU D:1115
BINDING SITE FOR RESIDUE CA D1117
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jdpa_ (A:)
1b: SCOP_d2jdpb_ (B:)
1c: SCOP_d2jdpc_ (C:)
1d: SCOP_d2jdpd_ (D:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
automated matches
(14)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d2jdpa_
A:
1b
d2jdpb_
B:
1c
d2jdpc_
C:
1d
d2jdpd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2jdpA00 (A:1-114)
1b: CATH_2jdpB00 (B:1-114)
1c: CATH_2jdpC00 (C:1-114)
1d: CATH_2jdpD00 (D:1-114)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 287.
(9)
1a
2jdpA00
A:1-114
1b
2jdpB00
B:1-114
1c
2jdpC00
C:1-114
1d
2jdpD00
D:1-114
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_2jdpD01 (D:6-113)
1b: PFAM_PA_IIL_2jdpD02 (D:6-113)
1c: PFAM_PA_IIL_2jdpD03 (D:6-113)
1d: PFAM_PA_IIL_2jdpD04 (D:6-113)
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Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Pseudomonas aeruginosa
(17)
1a
PA-IIL-2jdpD01
D:6-113
1b
PA-IIL-2jdpD02
D:6-113
1c
PA-IIL-2jdpD03
D:6-113
1d
PA-IIL-2jdpD04
D:6-113
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Asymmetric Unit 1
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Asym.Unit (94 KB)
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