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2JDN
Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
MUTANT (S22A) OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH METHYL-A-L-MANNOPYRANOSIDE
Authors
:
J. Adam, M. Pokorna, C. Sabin, E. P. Mitchell, A. Imberty, M. Wimmerova
Date
:
11 Jan 07 (Deposition) - 12 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pseudomonas Aerugionsa, Lectin, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Adam, M. Pokorna, C. Sabin, E. P. Mitchell, A. Imberty, M. Wimmerova
Engineering Of Pa-Iil Lectin From Pseudomonas Aeruginosa - Unravelling The Role Of The Specificity Loop For Sugar Preference.
Bmc Struct. Biol. V. 7 36 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-L-FUCOSE (FUCa)
3a: O1-METHYL-MANNOSE (MMAa)
3b: O1-METHYL-MANNOSE (MMAb)
3c: O1-METHYL-MANNOSE (MMAc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
MMA
3
Ligand/Ion
O1-METHYL-MANNOSE
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , ALA A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:881 , CA A:882 , HOH A:2169 , GLY B:114
BINDING SITE FOR RESIDUE FUC A 999
02
AC2
SOFTWARE
GLY A:114 , ASN B:21 , ALA B:22 , SER B:23 , GLY B:24 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:881 , CA B:882 , HOH B:2181
BINDING SITE FOR RESIDUE MMA B 700
03
AC3
SOFTWARE
ASN C:21 , ALA C:22 , SER C:23 , GLY C:24 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:881 , CA C:882 , HOH C:2150 , HOH C:2165 , GLY D:114
BINDING SITE FOR RESIDUE MMA C 700
04
AC4
SOFTWARE
GLY C:114 , ASN D:21 , ALA D:22 , SER D:23 , GLY D:24 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:881 , CA D:882 , HOH D:2193
BINDING SITE FOR RESIDUE MMA D 700
05
AC5
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , FUC A:999 , GLY B:114
BINDING SITE FOR RESIDUE CA A 881
06
AC6
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , FUC A:999
BINDING SITE FOR RESIDUE CA A 882
07
AC7
SOFTWARE
THR A:12 , ARG A:13 , HOH A:2026 , HOH A:2190 , HOH A:2191
BINDING SITE FOR RESIDUE SO4 A 991
08
AC8
SOFTWARE
GLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , MMA B:700
BINDING SITE FOR RESIDUE CA B 881
09
AC9
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , MMA B:700
BINDING SITE FOR RESIDUE CA B 882
10
BC1
SOFTWARE
ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , MMA C:700 , GLY D:114
BINDING SITE FOR RESIDUE CA C 881
11
BC2
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , MMA C:700
BINDING SITE FOR RESIDUE CA C 882
12
BC3
SOFTWARE
SER B:44 , ASN B:46 , ALA B:48 , SER C:44 , THR C:45 , ASN C:46 , HOH C:2078 , HOH C:2168 , HOH C:2169
BINDING SITE FOR RESIDUE SO4 C 991
13
BC4
SOFTWARE
GLY C:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , MMA D:700
BINDING SITE FOR RESIDUE CA D 881
14
BC5
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , MMA D:700
BINDING SITE FOR RESIDUE CA D 882
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jdna_ (A:)
1b: SCOP_d2jdnb_ (B:)
1c: SCOP_d2jdnc_ (C:)
1d: SCOP_d2jdnd_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
automated matches
(14)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d2jdna_
A:
1b
d2jdnb_
B:
1c
d2jdnc_
C:
1d
d2jdnd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2jdnA00 (A:1-114)
1b: CATH_2jdnB00 (B:1-114)
1c: CATH_2jdnC00 (C:1-114)
1d: CATH_2jdnD00 (D:1-114)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 287.
(9)
1a
2jdnA00
A:1-114
1b
2jdnB00
B:1-114
1c
2jdnC00
C:1-114
1d
2jdnD00
D:1-114
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_2jdnD01 (D:6-113)
1b: PFAM_PA_IIL_2jdnD02 (D:6-113)
1c: PFAM_PA_IIL_2jdnD03 (D:6-113)
1d: PFAM_PA_IIL_2jdnD04 (D:6-113)
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Clans
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)
(
)
Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Pseudomonas aeruginosa
(17)
1a
PA-IIL-2jdnD01
D:6-113
1b
PA-IIL-2jdnD02
D:6-113
1c
PA-IIL-2jdnD03
D:6-113
1d
PA-IIL-2jdnD04
D:6-113
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in chain 'A'
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