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Asym. Unit
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Asym.Unit (172 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
LECTIN PA-IIL OF P.AERUGINOSA COMPLEXED WITH DISACCHARIDE DERIVATIVE
Authors
:
K. Marotte, C. Sabin, C. Preville, M. Pymbock, I. Deguise, M. Wimmerova, E. P. Mitchell, A. Imberty, R. Roy
Date
:
10 Jan 07 (Deposition) - 24 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pseudomonas Aeruginosa, Lectin, Glycomimetic, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Marotte, C. Sabin, C. Preville, M. Pymbock, M. Wimmerova, E. P. Mitchell, A. Imberty, R. Roy
X-Ray Structures And Thermodynamics Of The Interaction Of Pa-Iil From Pseudomonas Aeruginosa With Disaccharide Derivatives.
Chemmedchem V. 2 1328 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4a: SULFATE ION (SO4a)
5a: METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXY... (T45a)
5b: METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXY... (T45b)
5c: METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXY... (T45c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
1
Ligand/Ion
SULFATE ION
5
T45
3
Ligand/Ion
METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN B:43 , SER B:44 , ASN B:46 , ALA B:48 , SER C:44 , THR C:45 , ASN C:46 , HOH C:2066 , HOH C:2138 , HOH C:2139
BINDING SITE FOR RESIDUE SO4 C1115
02
AC2
SOFTWARE
GLY A:114 , ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , NAG B:1116 , CA B:1118 , CA B:1119 , HOH B:2146
BINDING SITE FOR RESIDUE FUC B1115
03
AC3
SOFTWARE
SER B:23 , ASP B:96 , GLY B:97 , FUC B:1115 , T45 B:1117 , HOH B:2159 , HOH B:2160 , HOH B:2161
BINDING SITE FOR RESIDUE NAG B1116
04
AC4
SOFTWARE
NAG B:1116
BINDING SITE FOR RESIDUE T45 B1117
05
AC5
SOFTWARE
ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:1116 , CA A:1117 , HOH A:2148 , GLY B:114
BINDING SITE FOR RESIDUE FUC A1115
06
AC6
SOFTWARE
GLY C:114 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , NAG D:1116 , CA D:1118 , CA D:1119 , HOH D:2142
BINDING SITE FOR RESIDUE FUC D1115
07
AC7
SOFTWARE
SER D:23 , ASP D:96 , GLY D:97 , FUC D:1115 , T45 D:1117
BINDING SITE FOR RESIDUE NAG D1116
08
AC8
SOFTWARE
NAG D:1116
BINDING SITE FOR RESIDUE T45 D1117
09
AC9
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , FUC B:1115
BINDING SITE FOR RESIDUE CA B1118
10
BC1
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , FUC A:1115 , GLY B:114
BINDING SITE FOR RESIDUE CA A1116
11
BC2
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , FUC A:1115
BINDING SITE FOR RESIDUE CA A1117
12
BC3
SOFTWARE
GLY C:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , FUC D:1115
BINDING SITE FOR RESIDUE CA D1118
13
BC4
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , FUC D:1115
BINDING SITE FOR RESIDUE CA D1119
14
BC5
SOFTWARE
ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , FUC C:1118 , GLY D:114
BINDING SITE FOR RESIDUE CA C1116
15
BC6
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , FUC C:1118
BINDING SITE FOR RESIDUE CA C1117
16
BC7
SOFTWARE
GLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , FUC B:1115
BINDING SITE FOR RESIDUE CA B1119
17
BC8
SOFTWARE
ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:1116 , CA C:1117 , NAG C:1119 , HOH C:2129 , GLY D:114
BINDING SITE FOR RESIDUE FUC C1118
18
BC9
SOFTWARE
SER C:23 , ASP C:96 , GLY C:97 , FUC C:1118 , T45 C:1120 , HOH C:2140 , HOH C:2141 , HOH C:2142
BINDING SITE FOR RESIDUE NAG C1119
19
CC1
SOFTWARE
NAG C:1119 , HOH C:2143
BINDING SITE FOR RESIDUE T45 C1120
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jdka_ (A:)
1b: SCOP_d2jdkb_ (B:)
1c: SCOP_d2jdkc_ (C:)
1d: SCOP_d2jdkd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
automated matches
(14)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d2jdka_
A:
1b
d2jdkb_
B:
1c
d2jdkc_
C:
1d
d2jdkd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2jdkA00 (A:1-114)
1b: CATH_2jdkC00 (C:1-114)
1c: CATH_2jdkD00 (D:1-114)
1d: CATH_2jdkB00 (B:1-114)
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(
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 287.
(9)
1a
2jdkA00
A:1-114
1b
2jdkC00
C:1-114
1c
2jdkD00
D:1-114
1d
2jdkB00
B:1-114
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_2jdkD01 (D:6-113)
1b: PFAM_PA_IIL_2jdkD02 (D:6-113)
1c: PFAM_PA_IIL_2jdkD03 (D:6-113)
1d: PFAM_PA_IIL_2jdkD04 (D:6-113)
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Clans
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(
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(
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Organisms
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(
)
Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Pseudomonas aeruginosa
(17)
1a
PA-IIL-2jdkD01
D:6-113
1b
PA-IIL-2jdkD02
D:6-113
1c
PA-IIL-2jdkD03
D:6-113
1d
PA-IIL-2jdkD04
D:6-113
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Asymmetric Unit 1
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