PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2JD7
Biol. Unit 2
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (680 KB)
Biol.Unit 2 (682 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE FE-SOAKED FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEAL ANAEROBE PYROCOCCUS FURIOSUS
Authors
:
J. Tatur, W. R. Hagen, P. M. Matias
Date
:
05 Jan 07 (Deposition) - 27 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1: G,H,I,J,K,L,M,N,O,P,Q,R,Y,Z,0,1,2,3,4,5,6,7,8,9 (1x)
Biol. Unit 2: A,B,C,D,E,F,S,T,U,V,W,X (2x)
Keywords
:
Metal Transport, Iron, Pores, Ferritin, Archaeon, Entry Channels, Thermostability, Hyperthermophile, Ferroxidase Center Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Tatur, W. R. Hagen, P. M. Matias
Crystal Structure Of The Ferritin From The Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
J. Biol. Inorg. Chem. V. 12 615 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 22)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1aa: FE (III) ION (FEaa)
1ab: FE (III) ION (FEab)
1ac: FE (III) ION (FEac)
1ad: FE (III) ION (FEad)
1ae: FE (III) ION (FEae)
1af: FE (III) ION (FEaf)
1ag: FE (III) ION (FEag)
1ah: FE (III) ION (FEah)
1ai: FE (III) ION (FEai)
1aj: FE (III) ION (FEaj)
1ak: FE (III) ION (FEak)
1al: FE (III) ION (FEal)
1am: FE (III) ION (FEam)
1an: FE (III) ION (FEan)
1ao: FE (III) ION (FEao)
1ap: FE (III) ION (FEap)
1aq: FE (III) ION (FEaq)
1ar: FE (III) ION (FEar)
1as: FE (III) ION (FEas)
1at: FE (III) ION (FEat)
1au: FE (III) ION (FEau)
1av: FE (III) ION (FEav)
1aw: FE (III) ION (FEaw)
1ax: FE (III) ION (FEax)
1ay: FE (III) ION (FEay)
1az: FE (III) ION (FEaz)
1b: FE (III) ION (FEb)
1ba: FE (III) ION (FEba)
1bb: FE (III) ION (FEbb)
1bc: FE (III) ION (FEbc)
1bd: FE (III) ION (FEbd)
1be: FE (III) ION (FEbe)
1bf: FE (III) ION (FEbf)
1bg: FE (III) ION (FEbg)
1bh: FE (III) ION (FEbh)
1bi: FE (III) ION (FEbi)
1bj: FE (III) ION (FEbj)
1bk: FE (III) ION (FEbk)
1bl: FE (III) ION (FEbl)
1bm: FE (III) ION (FEbm)
1bn: FE (III) ION (FEbn)
1bo: FE (III) ION (FEbo)
1bp: FE (III) ION (FEbp)
1bq: FE (III) ION (FEbq)
1br: FE (III) ION (FEbr)
1bs: FE (III) ION (FEbs)
1bt: FE (III) ION (FEbt)
1bu: FE (III) ION (FEbu)
1bv: FE (III) ION (FEbv)
1bw: FE (III) ION (FEbw)
1bx: FE (III) ION (FEbx)
1by: FE (III) ION (FEby)
1bz: FE (III) ION (FEbz)
1c: FE (III) ION (FEc)
1ca: FE (III) ION (FEca)
1cb: FE (III) ION (FEcb)
1cc: FE (III) ION (FEcc)
1cd: FE (III) ION (FEcd)
1ce: FE (III) ION (FEce)
1cf: FE (III) ION (FEcf)
1cg: FE (III) ION (FEcg)
1ch: FE (III) ION (FEch)
1ci: FE (III) ION (FEci)
1cj: FE (III) ION (FEcj)
1ck: FE (III) ION (FEck)
1cl: FE (III) ION (FEcl)
1cm: FE (III) ION (FEcm)
1cn: FE (III) ION (FEcn)
1co: FE (III) ION (FEco)
1cp: FE (III) ION (FEcp)
1cq: FE (III) ION (FEcq)
1cr: FE (III) ION (FEcr)
1cs: FE (III) ION (FEcs)
1ct: FE (III) ION (FEct)
1cu: FE (III) ION (FEcu)
1cv: FE (III) ION (FEcv)
1cw: FE (III) ION (FEcw)
1cx: FE (III) ION (FEcx)
1cy: FE (III) ION (FEcy)
1cz: FE (III) ION (FEcz)
1d: FE (III) ION (FEd)
1da: FE (III) ION (FEda)
1db: FE (III) ION (FEdb)
1dc: FE (III) ION (FEdc)
1dd: FE (III) ION (FEdd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
1m: FE (III) ION (FEm)
1n: FE (III) ION (FEn)
1o: FE (III) ION (FEo)
1p: FE (III) ION (FEp)
1q: FE (III) ION (FEq)
1r: FE (III) ION (FEr)
1s: FE (III) ION (FEs)
1t: FE (III) ION (FEt)
1u: FE (III) ION (FEu)
1v: FE (III) ION (FEv)
1w: FE (III) ION (FEw)
1x: FE (III) ION (FEx)
1y: FE (III) ION (FEy)
1z: FE (III) ION (FEz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(51, 51)
Info
All Sites
01: BC6 (SOFTWARE)
02: DC9 (SOFTWARE)
03: EC1 (SOFTWARE)
04: EC2 (SOFTWARE)
05: EC3 (SOFTWARE)
06: EC4 (SOFTWARE)
07: EC5 (SOFTWARE)
08: EC6 (SOFTWARE)
09: EC7 (SOFTWARE)
10: EC8 (SOFTWARE)
11: EC9 (SOFTWARE)
12: FC1 (SOFTWARE)
13: FC2 (SOFTWARE)
14: FC3 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
18: FC7 (SOFTWARE)
19: FC8 (SOFTWARE)
20: FC9 (SOFTWARE)
21: GC1 (SOFTWARE)
22: GC2 (SOFTWARE)
23: GC3 (SOFTWARE)
24: GC4 (SOFTWARE)
25: GC5 (SOFTWARE)
26: HC9 (SOFTWARE)
27: KC3 (SOFTWARE)
28: LC5 (SOFTWARE)
29: LC6 (SOFTWARE)
30: LC7 (SOFTWARE)
31: LC8 (SOFTWARE)
32: LC9 (SOFTWARE)
33: MC1 (SOFTWARE)
34: MC2 (SOFTWARE)
35: MC3 (SOFTWARE)
36: MC4 (SOFTWARE)
37: MC5 (SOFTWARE)
38: MC6 (SOFTWARE)
39: MC7 (SOFTWARE)
40: MC8 (SOFTWARE)
41: MC9 (SOFTWARE)
42: NC1 (SOFTWARE)
43: NC2 (SOFTWARE)
44: NC3 (SOFTWARE)
45: NC4 (SOFTWARE)
46: NC5 (SOFTWARE)
47: NC6 (SOFTWARE)
48: NC7 (SOFTWARE)
49: NC8 (SOFTWARE)
50: NC9 (SOFTWARE)
51: OC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
SER 3:3 , GLU 3:4 , ARG 3:5 , ARG D:5 , GLU D:110
BINDING SITE FOR RESIDUE SO4 31668
02
DC9
SOFTWARE
GLU A:17 , GLU A:50 , HIS A:53 , FE A:202
BINDING SITE FOR RESIDUE FE A 201
03
EC1
SOFTWARE
GLU A:50 , GLU A:94 , GLU A:130 , FE A:201
BINDING SITE FOR RESIDUE FE A 202
04
EC2
SOFTWARE
GLU A:49 , GLU A:126 , GLU A:129 , GLU A:130
BINDING SITE FOR RESIDUE FE A 203
05
EC3
SOFTWARE
LYS A:135 , ASN C:65
BINDING SITE FOR RESIDUE SO4 A1168
06
EC4
SOFTWARE
GLU B:17 , GLU B:50 , HIS B:53 , FE B:202
BINDING SITE FOR RESIDUE FE B 201
07
EC5
SOFTWARE
GLU B:50 , GLU B:94 , GLU B:130 , FE B:201
BINDING SITE FOR RESIDUE FE B 202
08
EC6
SOFTWARE
GLU B:49 , GLU B:126 , GLU B:129 , GLU B:130
BINDING SITE FOR RESIDUE FE B 203
09
EC7
SOFTWARE
LYS B:135 , ASN E:65
BINDING SITE FOR RESIDUE SO4 B1168
10
EC8
SOFTWARE
SER 4:3 , GLU 4:4 , ARG 4:5 , ARG B:5 , GLU B:110
BINDING SITE FOR RESIDUE SO4 B1169
11
EC9
SOFTWARE
GLU C:17 , GLU C:50 , HIS C:53 , FE C:202
BINDING SITE FOR RESIDUE FE C 201
12
FC1
SOFTWARE
GLU C:50 , GLU C:94 , GLN C:127 , GLU C:130 , FE C:201
BINDING SITE FOR RESIDUE FE C 202
13
FC2
SOFTWARE
GLU C:49 , GLU C:126 , GLU C:129 , GLU C:130
BINDING SITE FOR RESIDUE FE C 203
14
FC3
SOFTWARE
LYS C:135 , ASN D:65
BINDING SITE FOR RESIDUE SO4 C1168
15
FC4
SOFTWARE
ARG C:5 , PRO Y:77
BINDING SITE FOR RESIDUE SO4 C1169
16
FC5
SOFTWARE
ASP C:71 , GLU C:72 , LYS G:75 , LYS U:75
BINDING SITE FOR RESIDUE SO4 C1170
17
FC6
SOFTWARE
GLU D:17 , GLU D:50 , HIS D:53 , FE D:202
BINDING SITE FOR RESIDUE FE D 201
18
FC7
SOFTWARE
GLU D:50 , GLU D:94 , GLN D:127 , GLU D:130 , FE D:201
BINDING SITE FOR RESIDUE FE D 202
19
FC8
SOFTWARE
GLU D:49 , GLU D:126 , GLU D:129 , GLU D:130
BINDING SITE FOR RESIDUE FE D 203
20
FC9
SOFTWARE
GLU E:17 , GLU E:50 , HIS E:53 , GLN E:127 , FE E:202
BINDING SITE FOR RESIDUE FE E 201
21
GC1
SOFTWARE
GLU E:50 , GLU E:94 , GLN E:127 , GLU E:130 , FE E:201
BINDING SITE FOR RESIDUE FE E 202
22
GC2
SOFTWARE
GLU E:49 , GLU E:126 , GLU E:129 , GLU E:130
BINDING SITE FOR RESIDUE FE E 203
23
GC3
SOFTWARE
GLU F:17 , GLU F:50 , HIS F:53 , FE F:202
BINDING SITE FOR RESIDUE FE F 201
24
GC4
SOFTWARE
GLU F:50 , GLU F:94 , GLN F:127 , GLU F:130 , FE F:201
BINDING SITE FOR RESIDUE FE F 202
25
GC5
SOFTWARE
GLU F:49 , GLU F:126 , GLU F:129 , GLU F:130
BINDING SITE FOR RESIDUE FE F 203
26
HC9
SOFTWARE
ARG I:5 , PRO W:77
BINDING SITE FOR RESIDUE SO4 I1168
27
KC3
SOFTWARE
LYS O:112 , ARG V:16 , PHE V:96
BINDING SITE FOR RESIDUE SO4 O1168
28
LC5
SOFTWARE
GLU S:17 , GLU S:50 , HIS S:53 , FE S:202
BINDING SITE FOR RESIDUE FE S 201
29
LC6
SOFTWARE
GLU S:50 , GLU S:94 , GLN S:127 , GLU S:130 , FE S:201
BINDING SITE FOR RESIDUE FE S 202
30
LC7
SOFTWARE
GLU S:49 , GLU S:126 , GLU S:129 , GLU S:130
BINDING SITE FOR RESIDUE FE S 203
31
LC8
SOFTWARE
LYS S:135 , ASN X:65
BINDING SITE FOR RESIDUE SO4 S1668
32
LC9
SOFTWARE
GLU T:17 , GLU T:50 , HIS T:53 , FE T:202
BINDING SITE FOR RESIDUE FE T 201
33
MC1
SOFTWARE
GLU T:50 , GLU T:94 , GLU T:130 , FE T:201
BINDING SITE FOR RESIDUE FE T 202
34
MC2
SOFTWARE
GLU T:49 , GLU T:126 , GLU T:129 , GLU T:130
BINDING SITE FOR RESIDUE FE T 203
35
MC3
SOFTWARE
ARG T:16 , PHE T:96
BINDING SITE FOR RESIDUE SO4 T1668
36
MC4
SOFTWARE
GLU U:17 , GLU U:50 , HIS U:53 , GLN U:127 , FE U:202
BINDING SITE FOR RESIDUE FE U 201
37
MC5
SOFTWARE
GLU U:50 , GLU U:94 , GLU U:130 , FE U:201
BINDING SITE FOR RESIDUE FE U 202
38
MC6
SOFTWARE
GLU U:49 , GLU U:126 , GLU U:129 , GLU U:130
BINDING SITE FOR RESIDUE FE U 203
39
MC7
SOFTWARE
GLU V:17 , GLU V:50 , HIS V:53 , FE V:202
BINDING SITE FOR RESIDUE FE V 201
40
MC8
SOFTWARE
GLU V:50 , GLU V:94 , GLU V:130 , FE V:201
BINDING SITE FOR RESIDUE FE V 202
41
MC9
SOFTWARE
GLU V:49 , GLU V:126 , GLU V:129 , GLU V:130
BINDING SITE FOR RESIDUE FE V 203
42
NC1
SOFTWARE
ASN U:65 , LYS V:135
BINDING SITE FOR RESIDUE SO4 V1668
43
NC2
SOFTWARE
LYS M:8 , SER V:3 , GLU V:4
BINDING SITE FOR RESIDUE SO4 V1669
44
NC3
SOFTWARE
GLU W:17 , GLU W:50 , HIS W:53 , FE W:202
BINDING SITE FOR RESIDUE FE W 201
45
NC4
SOFTWARE
GLU W:50 , GLU W:94 , GLU W:130 , FE W:201
BINDING SITE FOR RESIDUE FE W 202
46
NC5
SOFTWARE
GLU W:49 , GLU W:126 , GLU W:129 , GLU W:130
BINDING SITE FOR RESIDUE FE W 203
47
NC6
SOFTWARE
TYR I:19 , HIS I:93 , GLU W:4 , ARG W:5
BINDING SITE FOR RESIDUE SO4 W1668
48
NC7
SOFTWARE
GLU X:17 , GLU X:50 , HIS X:53 , FE X:202
BINDING SITE FOR RESIDUE FE X 201
49
NC8
SOFTWARE
GLU X:50 , GLU X:94 , GLN X:127 , GLU X:130 , FE X:201
BINDING SITE FOR RESIDUE FE X 202
50
NC9
SOFTWARE
GLU X:49 , GLU X:126 , GLU X:129 , GLU X:130
BINDING SITE FOR RESIDUE FE X 203
51
OC5
SOFTWARE
TYR C:19 , HIS C:93 , GLU Y:4 , ARG Y:5
BINDING SITE FOR RESIDUE SO4 Y1669
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 36)
Info
All SCOP Domains
1a: SCOP_d2jd70_ (0:)
1b: SCOP_d2jd71_ (1:)
1c: SCOP_d2jd72_ (2:)
1d: SCOP_d2jd73_ (3:)
1e: SCOP_d2jd74_ (4:)
1f: SCOP_d2jd75_ (5:)
1g: SCOP_d2jd76_ (6:)
1h: SCOP_d2jd77_ (7:)
1i: SCOP_d2jd78_ (8:)
1j: SCOP_d2jd79_ (9:)
1k: SCOP_d2jd7a_ (A:)
1l: SCOP_d2jd7b_ (B:)
1m: SCOP_d2jd7c_ (C:)
1n: SCOP_d2jd7d_ (D:)
1o: SCOP_d2jd7e_ (E:)
1p: SCOP_d2jd7f_ (F:)
1q: SCOP_d2jd7g_ (G:)
1r: SCOP_d2jd7h_ (H:)
1s: SCOP_d2jd7i_ (I:)
1t: SCOP_d2jd7j_ (J:)
1u: SCOP_d2jd7k_ (K:)
1v: SCOP_d2jd7l_ (L:)
1w: SCOP_d2jd7m_ (M:)
1x: SCOP_d2jd7n_ (N:)
1y: SCOP_d2jd7o_ (O:)
1z: SCOP_d2jd7p_ (P:)
1aa: SCOP_d2jd7q_ (Q:)
1ab: SCOP_d2jd7r_ (R:)
1ac: SCOP_d2jd7s_ (S:)
1ad: SCOP_d2jd7t_ (T:)
1ae: SCOP_d2jd7u_ (U:)
1af: SCOP_d2jd7v_ (V:)
1ag: SCOP_d2jd7w_ (W:)
1ah: SCOP_d2jd7x_ (X:)
1ai: SCOP_d2jd7y_ (Y:)
1aj: SCOP_d2jd7z_ (Z:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Pyrococcus furiosus [TaxId: 2261]
(4)
1a
d2jd70_
0:
1b
d2jd71_
1:
1c
d2jd72_
2:
1d
d2jd73_
3:
1e
d2jd74_
4:
1f
d2jd75_
5:
1g
d2jd76_
6:
1h
d2jd77_
7:
1i
d2jd78_
8:
1j
d2jd79_
9:
1k
d2jd7a_
A:
1l
d2jd7b_
B:
1m
d2jd7c_
C:
1n
d2jd7d_
D:
1o
d2jd7e_
E:
1p
d2jd7f_
F:
1q
d2jd7g_
G:
1r
d2jd7h_
H:
1s
d2jd7i_
I:
1t
d2jd7j_
J:
1u
d2jd7k_
K:
1v
d2jd7l_
L:
1w
d2jd7m_
M:
1x
d2jd7n_
N:
1y
d2jd7o_
O:
1z
d2jd7p_
P:
1aa
d2jd7q_
Q:
1ab
d2jd7r_
R:
1ac
d2jd7s_
S:
1ad
d2jd7t_
T:
1ae
d2jd7u_
U:
1af
d2jd7v_
V:
1ag
d2jd7w_
W:
1ah
d2jd7x_
X:
1ai
d2jd7y_
Y:
1aj
d2jd7z_
Z:
[
close SCOP info
]
CATH Domains
(1, 36)
Info
all CATH domains
1a: CATH_2jd7000 (_:1-167)
1b: CATH_2jd7100 (1:1-167)
1c: CATH_2jd7200 (2:1-167)
1d: CATH_2jd7300 (3:1-167)
1e: CATH_2jd7400 (4:1-167)
1f: CATH_2jd7500 (5:1-167)
1g: CATH_2jd7600 (6:1-167)
1h: CATH_2jd7700 (7:1-167)
1i: CATH_2jd7800 (8:1-167)
1j: CATH_2jd7900 (9:1-167)
1k: CATH_2jd7A00 (A:1-167)
1l: CATH_2jd7B00 (B:1-167)
1m: CATH_2jd7C00 (C:1-167)
1n: CATH_2jd7D00 (D:1-167)
1o: CATH_2jd7E00 (E:1-167)
1p: CATH_2jd7F00 (F:1-167)
1q: CATH_2jd7G00 (G:1-167)
1r: CATH_2jd7H00 (H:1-167)
1s: CATH_2jd7I00 (I:1-167)
1t: CATH_2jd7J00 (J:1-167)
1u: CATH_2jd7K00 (K:1-167)
1v: CATH_2jd7L00 (L:1-167)
1w: CATH_2jd7M00 (M:1-167)
1x: CATH_2jd7N00 (N:1-167)
1y: CATH_2jd7O00 (O:1-167)
1z: CATH_2jd7P00 (P:1-167)
1aa: CATH_2jd7Q00 (Q:1-167)
1ab: CATH_2jd7R00 (R:1-167)
1ac: CATH_2jd7S00 (S:1-167)
1ad: CATH_2jd7T00 (T:1-167)
1ae: CATH_2jd7U00 (U:1-167)
1af: CATH_2jd7V00 (V:1-167)
1ag: CATH_2jd7W00 (W:1-167)
1ah: CATH_2jd7X00 (X:1-167)
1ai: CATH_2jd7Y00 (Y:1-167)
1aj: CATH_2jd7Z00 (Z:1-167)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Pyrococcus furiosus. Organism_taxid: 2261.
(6)
1a
2jd7000
_:1-167
1b
2jd7100
1:1-167
1c
2jd7200
2:1-167
1d
2jd7300
3:1-167
1e
2jd7400
4:1-167
1f
2jd7500
5:1-167
1g
2jd7600
6:1-167
1h
2jd7700
7:1-167
1i
2jd7800
8:1-167
1j
2jd7900
9:1-167
1k
2jd7A00
A:1-167
1l
2jd7B00
B:1-167
1m
2jd7C00
C:1-167
1n
2jd7D00
D:1-167
1o
2jd7E00
E:1-167
1p
2jd7F00
F:1-167
1q
2jd7G00
G:1-167
1r
2jd7H00
H:1-167
1s
2jd7I00
I:1-167
1t
2jd7J00
J:1-167
1u
2jd7K00
K:1-167
1v
2jd7L00
L:1-167
1w
2jd7M00
M:1-167
1x
2jd7N00
N:1-167
1y
2jd7O00
O:1-167
1z
2jd7P00
P:1-167
1aa
2jd7Q00
Q:1-167
1ab
2jd7R00
R:1-167
1ac
2jd7S00
S:1-167
1ad
2jd7T00
T:1-167
1ae
2jd7U00
U:1-167
1af
2jd7V00
V:1-167
1ag
2jd7W00
W:1-167
1ah
2jd7X00
X:1-167
1ai
2jd7Y00
Y:1-167
1aj
2jd7Z00
Z:1-167
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (680 KB)
Header - Biol.Unit 1
Biol.Unit 2 (682 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2JD7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help