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2JCR
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
THE HYALURONAN BINDING DOMAIN OF MURINE CD44 IN A TYPE B COMPLEX WITH AN HA 8-MER
Authors
:
S. Banerji, A. J. Wright, M. E. M. Noble, D. J. Mahoney, I. D. Campbell, A. D. G. Jackson
Date
:
03 Jan 07 (Deposition) - 30 Jan 07 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sugar-Binding Protein, Hyauronan, Link-Domain, Proteoglycan, Polymorphism, Blood Group Antigen, Alternative Splicing, Lectin, Antigen, Membrane, Receptor, Sulfation, Glycoprotein, C-Type Lectin, Cell Adhesion, Extracellular Matrix, Pyrrolidone Carboxylic Acid, Transmembrane, Sugar-Binding, Phosphorylation, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Banerji, A. J. Wright, M. E. M. Noble, D. J. Mahoney, I. D. Campbell, A. J. Day, D. G. Jackson
Structures Of The Cd44-Hyaluronan Complex Provide Insight Into A Fundamental Carbohydrate-Protein Interaction.
Nat. Struct. Mol. Biol. V. 14 234 2008
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
1b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
1c: BETA-D-GLUCOPYRANURONIC ACID (BDPc)
2a: GLYCEROL (GOLa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
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No.
Name
Count
Type
Full Name
1
BDP
3
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:30 , THR A:31 , CYS A:32 , ARG A:33 , THR A:135 , ASN A:154 , ARG A:155 , ASP A:156 , HOH A:2072 , HOH A:2129
BINDING SITE FOR RESIDUE GOL A 1174
2
AC2
SOFTWARE
ARG A:45 , TYR A:46 , ASP A:68 , SER A:75 , LYS A:76 , CYS A:81 , ARG A:82 , TYR A:83 , ILE A:92 , ASN A:98 , ILE A:100 , CYS A:101 , ALA A:102 , ALA A:103 , TYR A:109 , GLU A:131 , HOH A:2052 , HOH A:2073 , HOH A:2130 , HOH A:2131 , HOH A:2132 , HOH A:2133
BINDING SITE FOR CHAIN A OF RESIDUES 1175 TO 1181
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LINK_2 (A:36-125)
2: LINK_1 (A:57-101)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LINK_2
PS50963
Link domain profile.
CD44_MOUSE
34-123
1
A:36-125
2
LINK_1
PS01241
Link domain signature.
CD44_MOUSE
55-99
1
A:57-101
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jcra_ (A:)
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Protein Domains
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(
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Organisms
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)
(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
Link domain
(9)
Protein domain
:
automated matches
(3)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d2jcra_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Xlink_2jcrA01 (A:35-124)
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Clan
:
C_Lectin
(98)
Family
:
Xlink
(4)
Mus musculus (Mouse)
(1)
1a
Xlink-2jcrA01
A:35-124
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Chain A
Asymmetric Unit 1
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