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2JCN
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF BAK1 - A MITOCHONDRIAL APOPTOSIS REGULATOR
Authors
:
M. Moche, P. Stenmark, C. Arrowsmith, H. Berglund, R. Busam, R. Collins A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hamma B. M. Hallberg, L. Holmberg Schiavone, I. Johansson, T. Karlberg, U. T. Kotenyova, S. Lundgren, M. E. Nilsson, T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Upsten, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund, Structural Genomics Con (Sgc)
Date
:
27 Dec 06 (Deposition) - 04 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Apoptosis, Mitochondrial Outer Membrane Permeabilization, Oligomerization, Cytochrome C Release, Membrane, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Moche, P. Stenmark, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg Schiavone, I. Johansson, T. Karlberg, U. Kosinska, T. Kotenyova, S. Lundgren, M. E. Nilsson, T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Upsten, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund
The Crystal Structure Of Bak1 - An Apoptosis Trigger In The Mitochondrial Outer Membrane
To Be Published
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:124 , TRP A:125 , GLY A:152 , ARG A:156 , TRP A:170 , ARG A:174 , HOH A:2054 , HOH A:2067 , HOH A:2089
BINDING SITE FOR RESIDUE SO4 A1001
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018829 (A28V, chain A, )
2: VAR_048417 (R42H, chain A, )
3: VAR_018830 (S69R, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018829
A
28
V
BAK_HUMAN
Polymorphism
4987115
A
A
28
V
2
UniProt
VAR_048417
R
42
H
BAK_HUMAN
Polymorphism
1051911
A
R
42
H
3
UniProt
VAR_018830
S
69
R
BAK_HUMAN
Polymorphism
5745592
A
S
69
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: BH3 (A:74-88)
2: BCL2_FAMILY (A:78-179)
3: BH1 (A:118-136)
4: BH2 (A:170-181)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
BAK_HUMAN
74-88
1
A:74-88
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
BAK_HUMAN
78-179
1
A:78-179
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
BAK_HUMAN
118-136
1
A:118-136
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
BAK_HUMAN
170-181
1
A:170-181
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (A:23-24)
Exon 1.3c (A:24-69 (gaps))
Exon 1.4a (A:69-117)
Exon 1.5b (A:117-177)
Exon 1.6b (A:178-184)
View:
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All Exon Boundaries
1: Boundary 1.1b/1.2
2: Boundary 1.2/1.3c
3: Boundary 1.3c/1.4a
4: Boundary 1.4a/1.5b
5: Boundary 1.5b/1.6b
6: Boundary 1.6b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000374467
1b
ENSE00001945899
chr6:
33548019-33547802
218
BAK_HUMAN
-
0
0
-
-
1.2
ENST00000374467
2
ENSE00000849371
chr6:
33545412-33545312
101
BAK_HUMAN
1-24
24
1
A:23-24
2
1.3c
ENST00000374467
3c
ENSE00000519515
chr6:
33543705-33543570
136
BAK_HUMAN
24-69
46
1
A:24-69 (gaps)
46
1.4a
ENST00000374467
4a
ENSE00000741329
chr6:
33543218-33543075
144
BAK_HUMAN
69-117
49
1
A:69-117
49
1.5b
ENST00000374467
5b
ENSE00001685926
chr6:
33541991-33541811
181
BAK_HUMAN
117-177
61
1
A:117-177
61
1.6b
ENST00000374467
6b
ENSE00001915603
chr6:
33541684-33540329
1356
BAK_HUMAN
178-211
34
1
A:178-184
7
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jcna_ (A:)
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Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2jcna_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Bcl_2_2jcnA01 (A:78-177)
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Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-2jcnA01
A:78-177
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Asymmetric Unit 1
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Asym.Unit (35 KB)
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