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2JCM
Biol. Unit 1
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Asym.Unit (91 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II IN COMPLEX WITH BERYLLIUM TRIFLUORIDE
Authors
:
K. Wallden, P. Stenmark, C. Arrowsmith, H. Berglund, R. Busam, R. Colli A. Edwards, M. Ehn, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, T. Karlberg, T. Kot A. Magnusdottir, P. Nilsson-Ehle, T. Nyman, D. Ogg, C. Persson, J. Sag M. Sundstrom, J. Uppenberg, A. G. Thorsell, S. Van Den Berg, P. Loppn J. Weigelt, M. Welin, P. Nordlund
Date
:
27 Dec 06 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cytosolic 5-Prime Nucleotidase Ii, Gmp-Imp Specific Nucleotidase, Cn-Ii, Nt5C2, Hydrolase, Cytosolic Purine 5-Prime Nucleotidase, Allosteric Enzyme, High Km 5-Prime Nucleotidase
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Reference
:
K. Wallden, P. Stenmark, T. Nyman, S. Flodin, S. Graslund, P. Loppnau, V. Bianchi, P. Nordlund
Crystal Structure Of Human Cytosolic 5'- Nucleotidase Ii: Insights Into Allosteric Regulation And Substrate Recognition
J. Biol. Chem. V. 282 17828 2007
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ASPARTATE BERYLLIUM TRIFLUORIDE (BFDa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: UNKNOWN ATOM OR ION (UNXa)
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No.
Name
Count
Type
Full Name
1
BFD
2
Mod. Amino Acid
ASPARTATE BERYLLIUM TRIFLUORIDE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
4
Ligand/Ion
SULFATE ION
4
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
BFD A:52 , ASP A:54 , ASP A:351 , HOH A:2216 , HOH A:2220
BINDING SITE FOR RESIDUE MG A1490
2
AC2
SOFTWARE
ARG A:144 , GLN A:453 , ARG A:456 , TYR A:457
BINDING SITE FOR RESIDUE SO4 A1491
3
AC3
SOFTWARE
GLY A:130 , PRO A:131 , ARG A:134 , LYS A:140
BINDING SITE FOR RESIDUE SO4 A1492
4
AC4
SOFTWARE
ARG A:363
BINDING SITE FOR RESIDUE UNX A1489
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024244 (T3A, chain A, )
2: VAR_030242 (Q136R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024244
T
3
A
5NTC_HUMAN
Polymorphism
10883841
A
T
3
A
2
UniProt
VAR_030242
Q
136
R
5NTC_HUMAN
Polymorphism
12262171
A
Q
136
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_5_nucleotid_2jcmA01 (A:35-488)
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Clan
:
HAD
(186)
Family
:
5_nucleotid
(10)
Homo sapiens (Human)
(10)
1a
5_nucleotid-2jcmA01
A:35-488
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Asym.Unit (91 KB)
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