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2JCL
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE (R365K) IN THE ABSENCE OF LIGANDS
Authors
:
H. Jamaluddin, P. Tumbale, S. G. Withers, K. R. Acharya, K. Brew
Date
:
26 Dec 06 (Deposition) - 22 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.29
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transmembrane, Golgi Apparatus, Enzyme Mechanism, Glycoprotein, Metal-Binding, Signal-Anchor, Alpha-1, Membrane, Manganese, Transferase, Glycosyltransferase, Substrate Specificity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Jamaluddin, P. Tumbale, S. G. Withers, K. R. Acharya, K. Brew
Conformational Changes Induced By Binding Udp-2F- Galactose To Alpha-1, 3 Galactosyltransferase- Implications For Catalysis.
J. Mol. Biol. V. 369 1270 2007
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:1247 , TRP A:1249 , GLU B:2192
BINDING SITE FOR RESIDUE SO4 B3360
2
AC2
SOFTWARE
ARG B:2202 , ILE B:2206 , ASP B:2225 , ALA B:2281 , PHE B:2284
BINDING SITE FOR RESIDUE SO4 B3361
3
AC3
SOFTWARE
GLU B:2297 , CYS B:2298 , HIS B:2319 , TYR B:2323
BINDING SITE FOR RESIDUE SO4 B3362
4
AC4
SOFTWARE
VAL B:2211 , HIS B:2216
BINDING SITE FOR RESIDUE SO4 B3363
5
AC5
SOFTWARE
MET B:2166 , LYS B:2188 , ILE B:2189 , LYS B:2190 , LYS B:2193 , THR B:2205 , GLU B:2208 , HIS B:2209
BINDING SITE FOR RESIDUE SO4 B3364
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.7 (A:1082-1092 | B:2082-2092)
Exon 1.8 (A:1092-1138 | B:2092-2138)
Exon 1.9 (A:1138-1358 | B:2138-2358)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016033
1
ENSBTAE00000262074
chr11:
95459665-95459416
250
GGTA1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016033
2
ENSBTAE00000262073
chr11:
95449479-95449385
95
GGTA1_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000016033
3
ENSBTAE00000262072
chr11:
95415347-95415232
116
GGTA1_BOVIN
-
0
0
-
-
1.4
ENSBTAT00000016033
4
ENSBTAE00000262071
chr11:
95404542-95404454
89
GGTA1_BOVIN
1-27
27
0
-
-
1.5
ENSBTAT00000016033
5
ENSBTAE00000262069
chr11:
95397952-95397917
36
GGTA1_BOVIN
27-39
13
0
-
-
1.6
ENSBTAT00000016033
6
ENSBTAE00000262068
chr11:
95396284-95396219
66
GGTA1_BOVIN
39-61
23
0
-
-
1.7
ENSBTAT00000016033
7
ENSBTAE00000262067
chr11:
95395659-95395567
93
GGTA1_BOVIN
61-92
32
2
A:1082-1092
B:2082-2092
11
11
1.8
ENSBTAT00000016033
8
ENSBTAE00000004437
chr11:
95387778-95387641
138
GGTA1_BOVIN
92-138
47
2
A:1092-1138
B:2092-2138
47
47
1.9
ENSBTAT00000016033
9
ENSBTAE00000130543
chr11:
95383311-95382365
947
GGTA1_BOVIN
138-368
231
2
A:1138-1358
B:2138-2358
221
221
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2jcla1 (A:1082-1358)
1b: SCOP_d2jclb1 (B:2082-2358)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
alpha-1,3-galactosyltransferase catalytic domain
(22)
Cow (Bos taurus) [TaxId: 9913]
(22)
1a
d2jcla1
A:1082-1358
1b
d2jclb1
B:2082-2358
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jclA00 (A:1082-1358)
1b: CATH_2jclB00 (B:2082-2358)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Bovine (Bos taurus)
(20)
1a
2jclA00
A:1082-1358
1b
2jclB00
B:2082-2358
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_6_2jclB01 (B:2082-2358)
1b: PFAM_Glyco_transf_6_2jclB02 (B:2082-2358)
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Clan
:
GT-A
(172)
Family
:
Glyco_transf_6
(55)
Bos taurus (Bovine)
(15)
1a
Glyco_transf_6-2jclB01
B:2082-2358
1b
Glyco_transf_6-2jclB02
B:2082-2358
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Asymmetric Unit 1
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Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
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