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2JC2
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE NATURAL F112L HUMAN SORCIN MUTANT
Authors
:
S. Franceschini, A. Ilari, G. Colotti, E. Chiancone
Date
:
19 Dec 06 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ryanodine Receptor Interacting Protein, Calcium Binding Protein, Natural F112L Sorcin Mutant, Calcium, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Franceschini, A. Ilari, D. Verzili, C. Zamparelli, A. Antaramian, A. Rueda, H. H. Valdivia, E. Chiancone, G. Colotti
Molecular Basis For The Impaired Function Of The Natural F112L Sorcin Mutant: X-Ray Crystal Structure, Calcium Affinity, And Interaction With Annexin Vii And The Ryanodine Receptor.
Faseb J. V. 22 295 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:172 , ARG A:175 , ARG A:176
BINDING SITE FOR RESIDUE SO4 A1199
2
AC2
SOFTWARE
GLY A:66 , TYR A:67 , HOH A:2023
BINDING SITE FOR RESIDUE SO4 A1200
3
AC3
SOFTWARE
PHE A:156 , ALA C:64 , GLY C:66 , TYR C:67 , ARG C:116 , HOH C:2034
BINDING SITE FOR RESIDUE SO4 C1199
4
AC4
SOFTWARE
SER C:172 , ARG C:175 , ARG C:176
BINDING SITE FOR RESIDUE SO4 C1200
5
AC5
SOFTWARE
ALA B:64 , GLY B:66
BINDING SITE FOR RESIDUE SO4 B1199
6
AC6
SOFTWARE
PHE B:156 , ALA D:64 , GLY D:66
BINDING SITE FOR RESIDUE SO4 D1199
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:45-64,B:45-64,C:45-64,D:45-64|A:...)
2: EF_HAND_1 (A:83-95,B:83-95,C:83-95,D:83-95|A:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
SORCN_HUMAN
45-64
100-135
70-98
151-169
16
A:45-64
B:45-64
C:45-64
D:45-64
A:100-135
B:100-135
C:100-135
D:100-135
A:70-98
B:70-98
C:70-98
D:70-98
A:151-169
B:151-169
C:151-169
D:151-169
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
SORCN_HUMAN
83-95
113-125
8
A:83-95
B:83-95
C:83-95
D:83-95
A:113-125
B:113-125
C:113-125
D:113-125
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Exons
(7, 28)
Info
All Exons
Exon 1.3 (A:33-45 | B:33-45 | C:33-45 | D:33...)
Exon 1.4 (A:46-69 | B:46-69 | C:46-69 | D:46...)
Exon 1.6a (A:69-83 | B:69-83 | C:69-83 | D:69...)
Exon 1.7c (A:84-133 | B:84-133 | C:84-133 | D...)
Exon 1.8a (A:133-171 | B:133-171 | C:133-171 ...)
Exon 1.9a (A:171-190 | B:171-190 | C:171-190 ...)
Exon 1.10e (A:191-198 | B:191-198 | C:191-198 ...)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.6a
4: Boundary 1.6a/1.7c
5: Boundary 1.7c/1.8a
6: Boundary 1.8a/1.9a
7: Boundary 1.9a/1.10e
8: Boundary 1.10e/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000265729
2a
ENSE00000877269
chr7:
87849394-87849291
104
SORCN_HUMAN
1-17
17
0
-
-
1.3
ENST00000265729
3
ENSE00000454471
chr7:
87848257-87848174
84
SORCN_HUMAN
18-45
28
4
A:33-45
B:33-45
C:33-45
D:33-45
13
13
13
13
1.4
ENST00000265729
4
ENSE00001650311
chr7:
87846506-87846437
70
SORCN_HUMAN
46-69
24
4
A:46-69
B:46-69
C:46-69
D:46-69
24
24
24
24
1.6a
ENST00000265729
6a
ENSE00001746532
chr7:
87840240-87840197
44
SORCN_HUMAN
69-83
15
4
A:69-83
B:69-83
C:69-83
D:69-83
15
15
15
15
1.7c
ENST00000265729
7c
ENSE00001612675
chr7:
87839445-87839298
148
SORCN_HUMAN
84-133
50
4
A:84-133
B:84-133
C:84-133
D:84-133
50
50
50
50
1.8a
ENST00000265729
8a
ENSE00001711742
chr7:
87838767-87838654
114
SORCN_HUMAN
133-171
39
4
A:133-171
B:133-171
C:133-171
D:133-171
39
39
39
39
1.9a
ENST00000265729
9a
ENSE00001618133
chr7:
87837880-87837822
59
SORCN_HUMAN
171-190
20
4
A:171-190
B:171-190
C:171-190
D:171-190
20
20
20
20
1.10e
ENST00000265729
10e
ENSE00001811340
chr7:
87835819-87834433
1387
SORCN_HUMAN
191-198
8
4
A:191-198
B:191-198
C:191-198
D:191-198
8
8
8
8
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jc2a_ (A:)
1b: SCOP_d2jc2b_ (B:)
1c: SCOP_d2jc2c_ (C:)
1d: SCOP_d2jc2d_ (D:)
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All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2jc2a_
A:
1b
d2jc2b_
B:
1c
d2jc2c_
C:
1d
d2jc2d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_EF_hand_5_2jc2D01 (D:104-163)
1b: PFAM_EF_hand_5_2jc2D02 (D:104-163)
1c: PFAM_EF_hand_5_2jc2D03 (D:104-163)
1d: PFAM_EF_hand_5_2jc2D04 (D:104-163)
2a: PFAM_EF_hand_6_2jc2D05 (D:45-102)
2b: PFAM_EF_hand_6_2jc2D06 (D:45-102)
2c: PFAM_EF_hand_6_2jc2D07 (D:45-102)
2d: PFAM_EF_hand_6_2jc2D08 (D:45-102)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-2jc2D01
D:104-163
1b
EF_hand_5-2jc2D02
D:104-163
1c
EF_hand_5-2jc2D03
D:104-163
1d
EF_hand_5-2jc2D04
D:104-163
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-2jc2D05
D:45-102
2b
EF_hand_6-2jc2D06
D:45-102
2c
EF_hand_6-2jc2D07
D:45-102
2d
EF_hand_6-2jc2D08
D:45-102
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Asym.Unit (113 KB)
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