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2JC2
Biol. Unit 1
Info
Asym.Unit (113 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE NATURAL F112L HUMAN SORCIN MUTANT
Authors
:
S. Franceschini, A. Ilari, G. Colotti, E. Chiancone
Date
:
19 Dec 06 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ryanodine Receptor Interacting Protein, Calcium Binding Protein, Natural F112L Sorcin Mutant, Calcium, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Franceschini, A. Ilari, D. Verzili, C. Zamparelli, A. Antaramian, A. Rueda, H. H. Valdivia, E. Chiancone, G. Colotti
Molecular Basis For The Impaired Function Of The Natural F112L Sorcin Mutant: X-Ray Crystal Structure, Calcium Affinity, And Interaction With Annexin Vii And The Ryanodine Receptor.
Faseb J. V. 22 295 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
View:
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No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:172 , ARG A:175 , ARG A:176
BINDING SITE FOR RESIDUE SO4 A1199
2
AC2
SOFTWARE
GLY A:66 , TYR A:67 , HOH A:2023
BINDING SITE FOR RESIDUE SO4 A1200
3
AC3
SOFTWARE
PHE A:156 , ALA C:64 , GLY C:66 , TYR C:67 , ARG C:116 , HOH C:2034
BINDING SITE FOR RESIDUE SO4 C1199
4
AC5
SOFTWARE
ALA B:64 , GLY B:66
BINDING SITE FOR RESIDUE SO4 B1199
5
AC6
SOFTWARE
PHE B:156 , ALA D:64 , GLY D:66
BINDING SITE FOR RESIDUE SO4 D1199
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:45-64,B:45-64,A:100-135,B:100-13...)
2: EF_HAND_1 (A:83-95,B:83-95,A:113-125,B:113-12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
SORCN_HUMAN
45-64
100-135
70-98
151-169
8
A:45-64
B:45-64
-
-
A:100-135
B:100-135
-
-
A:70-98
B:70-98
-
-
A:151-169
B:151-169
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
SORCN_HUMAN
83-95
113-125
4
A:83-95
B:83-95
-
-
A:113-125
B:113-125
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jc2a_ (A:)
1b: SCOP_d2jc2b_ (B:)
1c: SCOP_d2jc2c_ (C:)
1d: SCOP_d2jc2d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2jc2a_
A:
1b
d2jc2b_
B:
1c
d2jc2c_
C:
1d
d2jc2d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_EF_hand_5_2jc2D01 (D:104-163)
1b: PFAM_EF_hand_5_2jc2D02 (D:104-163)
1c: PFAM_EF_hand_5_2jc2D03 (D:104-163)
1d: PFAM_EF_hand_5_2jc2D04 (D:104-163)
2a: PFAM_EF_hand_6_2jc2D05 (D:45-102)
2b: PFAM_EF_hand_6_2jc2D06 (D:45-102)
2c: PFAM_EF_hand_6_2jc2D07 (D:45-102)
2d: PFAM_EF_hand_6_2jc2D08 (D:45-102)
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Families
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Organisms
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)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-2jc2D01
D:104-163
1b
EF_hand_5-2jc2D02
D:104-163
1c
EF_hand_5-2jc2D03
D:104-163
1d
EF_hand_5-2jc2D04
D:104-163
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-2jc2D05
D:45-102
2b
EF_hand_6-2jc2D06
D:45-102
2c
EF_hand_6-2jc2D07
D:45-102
2d
EF_hand_6-2jc2D08
D:45-102
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Show PDB file:
Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
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