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Getting 'Exon' information from database.
2JBM
Asym. Unit
Info
Asym.Unit (567 KB)
Biol.Unit 1 (289 KB)
Biol.Unit 2 (275 KB)
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(1)
Title
:
QPRTASE STRUCTURE FROM HUMAN
Authors
:
H. Liu, J. H. Naismith
Date
:
08 Dec 06 (Deposition) - 13 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Nad, Enzyme, Metabolism, Transferase, Polymorphism, Glycosyltransferase, Pyridine Nucleotide Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Liu, K. Woznica, G. Catton, A. Crawford, N. Bottinf, J. H. Naismith
Structural And Kinetic Characterization Of Quinolinate Phosphoribosyltransferase (Hqprtase) From Homo Sapiens.
J. Mol. Biol. V. 373 755 2007
[
close entry info
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: S,R MESO-TARTARIC ACID (SRTa)
1b: S,R MESO-TARTARIC ACID (SRTb)
1c: S,R MESO-TARTARIC ACID (SRTc)
1d: S,R MESO-TARTARIC ACID (SRTd)
1e: S,R MESO-TARTARIC ACID (SRTe)
1f: S,R MESO-TARTARIC ACID (SRTf)
1g: S,R MESO-TARTARIC ACID (SRTg)
1h: S,R MESO-TARTARIC ACID (SRTh)
1i: S,R MESO-TARTARIC ACID (SRTi)
1j: S,R MESO-TARTARIC ACID (SRTj)
1k: S,R MESO-TARTARIC ACID (SRTk)
1l: S,R MESO-TARTARIC ACID (SRTl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SRT
12
Ligand/Ion
S,R MESO-TARTARIC ACID
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:139 , ARG A:140 , ARG A:163 , LYS A:173 , HOH A:2216 , HOH A:2374 , HOH A:2375 , ARG B:104
BINDING SITE FOR RESIDUE SRT A 401
02
AC2
SOFTWARE
ARG A:104 , THR B:139 , ARG B:140 , ARG B:163 , LYS B:173 , HOH B:2321 , HOH B:2322 , HOH B:2323
BINDING SITE FOR RESIDUE SRT B 401
03
AC3
SOFTWARE
THR C:139 , ARG C:140 , ARG C:163 , LYS C:173 , HOH C:2168 , HOH C:2280 , ARG D:104
BINDING SITE FOR RESIDUE SRT C 401
04
AC4
SOFTWARE
ARG C:104 , THR D:139 , ARG D:140 , ARG D:163 , LYS D:173 , HOH D:2172 , HOH D:2290 , HOH D:2291 , HOH D:2292
BINDING SITE FOR RESIDUE SRT D 401
05
AC5
SOFTWARE
THR E:139 , ARG E:140 , ARG E:163 , LYS E:173 , HOH E:2155 , HOH E:2266 , ARG F:104
BINDING SITE FOR RESIDUE SRT E 401
06
AC6
SOFTWARE
ARG E:104 , THR F:139 , ARG F:140 , LYS F:141 , ARG F:163 , LYS F:173 , HOH F:2314 , HOH F:2315
BINDING SITE FOR RESIDUE SRT F 401
07
AC7
SOFTWARE
THR G:139 , ARG G:140 , ARG G:163 , LYS G:173 , HOH G:2106 , HOH G:2179 , HOH G:2180 , HOH G:2181 , ARG H:104
BINDING SITE FOR RESIDUE SRT G 401
08
AC8
SOFTWARE
ARG G:104 , THR H:139 , ARG H:140 , LYS H:141 , ARG H:163 , LYS H:173 , HOH H:2125 , HOH H:2126 , HOH H:2127
BINDING SITE FOR RESIDUE SRT H 401
09
AC9
SOFTWARE
THR I:139 , ARG I:140 , LYS I:141 , ARG I:163 , LYS I:173 , HOH I:2268 , HOH I:2269 , ARG J:104
BINDING SITE FOR RESIDUE SRT I 401
10
BC1
SOFTWARE
ARG I:104 , THR J:139 , ARG J:140 , ARG J:163 , LYS J:173 , HOH J:2254 , HOH J:2255 , HOH J:2256
BINDING SITE FOR RESIDUE SRT J 401
11
BC2
SOFTWARE
THR K:139 , ARG K:140 , LYS K:141 , ARG K:163 , LYS K:173 , HOH K:2124 , HOH K:2206 , ARG L:104
BINDING SITE FOR RESIDUE SRT K 401
12
BC3
SOFTWARE
ARG K:104 , THR L:139 , ARG L:140 , ARG L:163 , LYS L:173 , HOH L:2148
BINDING SITE FOR RESIDUE SRT L 401
[
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SAPs(SNPs)/Variants
(2, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021915 (A160V, chain A/B/C/D/E/F/G/H/I/J/K/L, )
2: VAR_050219 (A197A, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021915
A
158
V
NADC_HUMAN
Polymorphism
2303255
A/B/C/D/E/F/G/H/I/J/K/L
A
160
V
2
UniProt
VAR_050219
T
195
A
NADC_HUMAN
Polymorphism
9932770
A/B/C/D/E/F/G/H/I/J/K/L
A
197
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(4, 48)
Info
All Exons
Exon 1.2a (A:3-7 | B:4-7 | C:3-7 | D:4-7 | E:...)
Exon 1.3b (A:7-185 | B:7-185 | C:7-185 | D:7-...)
Exon 1.4 (A:186-229 | B:186-229 | C:186-229 ...)
Exon 1.5b (A:230-292 | B:230-292 | C:230-288 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000395384
2a
ENSE00001895091
chr16:
29690358-29690531
174
NADC_HUMAN
1-5
5
12
A:3-7
B:4-7
C:3-7
D:4-7
E:4-7
F:4-7
G:4-7
H:4-7
I:4-7
J:4-7
K:4-7
L:4-7
5
4
5
4
4
4
4
4
4
4
4
4
1.3b
ENST00000395384
3b
ENSE00001167835
chr16:
29705985-29706520
536
NADC_HUMAN
5-183
179
12
A:7-185
B:7-185
C:7-185
D:7-185
E:7-185
F:7-185
G:7-185
H:7-185
I:7-185
J:7-185
K:7-185
L:7-185
179
179
179
179
179
179
179
179
179
179
179
179
1.4
ENST00000395384
4
ENSE00000681302
chr16:
29708317-29708448
132
NADC_HUMAN
184-227
44
12
A:186-229
B:186-229
C:186-229
D:186-229
E:186-229
F:186-229
G:186-229
H:186-229
I:186-229
J:186-229
K:186-229
L:186-229
44
44
44
44
44
44
44
44
44
44
44
44
1.5b
ENST00000395384
5b
ENSE00001298023
chr16:
29708520-29709325
806
NADC_HUMAN
228-297
70
12
A:230-292
B:230-292
C:230-288
D:230-288
E:230-292
F:230-288
G:230-288
H:230-288
I:230-292
J:230-288
K:230-288
L:230-288
63
63
59
59
63
59
59
59
63
59
59
59
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_QRPTase_N_2jbmL01 (L:31-114)
1b: PFAM_QRPTase_N_2jbmL02 (L:31-114)
1c: PFAM_QRPTase_N_2jbmL03 (L:31-114)
1d: PFAM_QRPTase_N_2jbmL04 (L:31-114)
1e: PFAM_QRPTase_N_2jbmL05 (L:31-114)
1f: PFAM_QRPTase_N_2jbmL06 (L:31-114)
1g: PFAM_QRPTase_N_2jbmL07 (L:31-114)
1h: PFAM_QRPTase_N_2jbmL08 (L:31-114)
1i: PFAM_QRPTase_N_2jbmL09 (L:31-114)
1j: PFAM_QRPTase_N_2jbmL10 (L:31-114)
1k: PFAM_QRPTase_N_2jbmL11 (L:31-114)
1l: PFAM_QRPTase_N_2jbmL12 (L:31-114)
2a: PFAM_QRPTase_C_2jbmL13 (L:116-286)
2b: PFAM_QRPTase_C_2jbmL14 (L:116-286)
2c: PFAM_QRPTase_C_2jbmL15 (L:116-286)
2d: PFAM_QRPTase_C_2jbmL16 (L:116-286)
2e: PFAM_QRPTase_C_2jbmL17 (L:116-286)
2f: PFAM_QRPTase_C_2jbmL18 (L:116-286)
2g: PFAM_QRPTase_C_2jbmL19 (L:116-286)
2h: PFAM_QRPTase_C_2jbmL20 (L:116-286)
2i: PFAM_QRPTase_C_2jbmL21 (L:116-286)
2j: PFAM_QRPTase_C_2jbmL22 (L:116-286)
2k: PFAM_QRPTase_C_2jbmL23 (L:116-286)
2l: PFAM_QRPTase_C_2jbmL24 (L:116-286)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Hybrid
(58)
Family
:
QRPTase_N
(10)
Homo sapiens (Human)
(1)
1a
QRPTase_N-2jbmL01
L:31-114
1b
QRPTase_N-2jbmL02
L:31-114
1c
QRPTase_N-2jbmL03
L:31-114
1d
QRPTase_N-2jbmL04
L:31-114
1e
QRPTase_N-2jbmL05
L:31-114
1f
QRPTase_N-2jbmL06
L:31-114
1g
QRPTase_N-2jbmL07
L:31-114
1h
QRPTase_N-2jbmL08
L:31-114
1i
QRPTase_N-2jbmL09
L:31-114
1j
QRPTase_N-2jbmL10
L:31-114
1k
QRPTase_N-2jbmL11
L:31-114
1l
QRPTase_N-2jbmL12
L:31-114
Clan
:
TIM_barrel
(694)
Family
:
QRPTase_C
(10)
Homo sapiens (Human)
(1)
2a
QRPTase_C-2jbmL13
L:116-286
2b
QRPTase_C-2jbmL14
L:116-286
2c
QRPTase_C-2jbmL15
L:116-286
2d
QRPTase_C-2jbmL16
L:116-286
2e
QRPTase_C-2jbmL17
L:116-286
2f
QRPTase_C-2jbmL18
L:116-286
2g
QRPTase_C-2jbmL19
L:116-286
2h
QRPTase_C-2jbmL20
L:116-286
2i
QRPTase_C-2jbmL21
L:116-286
2j
QRPTase_C-2jbmL22
L:116-286
2k
QRPTase_C-2jbmL23
L:116-286
2l
QRPTase_C-2jbmL24
L:116-286
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