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2JBH
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
HUMAN PHOSPHORIBOSYL TRANSFERASE DOMAIN CONTAINING 1
Authors
:
M. Welin, P. Stenmark, C. Arrowsmith, H. Berglund, R. Busam, R. Collins A. Edwards, H. Eklund, U. B. Ericsson, S. Flodin, A. Flores, S. Graslun M. Hammarstrom, B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, I. Johansson, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nilsson, T. Ny D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, A. G. Thor S. Van Den Berg, J. Weigelt, P. Nordlund
Date
:
07 Dec 06 (Deposition) - 20 Dec 06 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Glycosyltransferase, Transferase, Purine Salvage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Welin, L. Egeblad, A. Johansson, P. Stenmark, L. Wang, S. Flodin, T. Nyman, L. Tresaugues, T. Kotenyova, I. Johansson, S. Eriksson, H. Eklund, P. Nordlund
Structural And Functional Studies Of The Human Phosphoribosyltransferase Domain Containing Protein 1.
Febs J. V. 277 4920 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
3a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
3b: S-(DIMETHYLARSENIC)CYSTEINE (CASb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
2
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
CAS
2
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:75 , LYS A:76 , GLY A:77 , ASP A:201 , ARG A:207 , CA A:1229 , HOH A:2139 , HOH A:2140 , HOH A:2141 , HOH A:2142 , HOH A:2145
BINDING SITE FOR RESIDUE PO4 A1227
2
AC2
SOFTWARE
GLU A:141 , ASP A:142 , 5GP A:1230 , HOH A:2140 , HOH A:2141 , HOH A:2143
BINDING SITE FOR RESIDUE CA A1228
3
AC3
SOFTWARE
ASP A:201 , PO4 A:1227 , HOH A:2118 , HOH A:2127 , HOH A:2145 , HOH B:2089 , HOH B:2090
BINDING SITE FOR RESIDUE CA A1229
4
AC4
SOFTWARE
LEU B:75 , LYS B:76 , GLY B:77 , ASP B:201 , ARG B:207 , CA B:1228 , HOH B:2075 , HOH B:2108 , HOH B:2141 , HOH B:2142 , HOH B:2144 , HOH B:2145
BINDING SITE FOR RESIDUE PO4 B1227
5
AC5
SOFTWARE
ASP B:201 , PO4 B:1227 , HOH B:2127 , HOH B:2128 , HOH B:2143 , HOH B:2147
BINDING SITE FOR RESIDUE CA B1228
6
AC6
SOFTWARE
GLU B:141 , ASP B:142 , 5GP B:1230 , HOH B:2142 , HOH B:2144 , HOH B:2153
BINDING SITE FOR RESIDUE CA B1229
7
AC7
SOFTWARE
GLU A:141 , ASP A:142 , VAL A:143 , GLY A:145 , THR A:146 , GLY A:147 , ARG A:148 , THR A:149 , LYS A:173 , PHE A:194 , VAL A:195 , LEU A:200 , ASP A:201 , CA A:1228 , HOH A:2142 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2146 , HOH A:2147 , HOH A:2148 , GLN B:116 , HOH B:2087
BINDING SITE FOR RESIDUE 5GP A1230
8
AC8
SOFTWARE
GLU B:141 , ASP B:142 , VAL B:143 , GLY B:145 , THR B:146 , GLY B:147 , ARG B:148 , THR B:149 , LYS B:173 , LEU B:193 , PHE B:194 , VAL B:195 , ASP B:201 , CA B:1229 , HOH B:2108 , HOH B:2146 , HOH B:2147 , HOH B:2148 , HOH B:2150 , HOH B:2152 , HOH B:2153
BINDING SITE FOR RESIDUE 5GP B1230
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(9, 18)
Info
All Exons
Exon 1.1a (A:7-16 | B:9-16)
Exon 1.2 (A:17-52 | B:17-52)
Exon 1.3 (A:52-110 | B:52-113)
Exon 1.5 (A:121-135 | B:114-135)
Exon 1.6 (A:136-141 | B:136-141)
Exon 1.7b (A:142-169 | B:142-169)
Exon 1.8 (A:169-185 (gaps) | B:169-185 (gaps...)
Exon 1.9 (A:185-210 | B:185-210)
Exon 1.10b (A:211-225 | B:211-225)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10b
10: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000320152
1a
ENSE00001124245
chr10:
25241533-25241457
77
PRDC1_HUMAN
1-16
16
2
A:7-16
B:9-16
10
8
1.2
ENST00000320152
2
ENSE00001344078
chr10:
25231365-25231259
107
PRDC1_HUMAN
17-52
36
2
A:17-52
B:17-52
36
36
1.3
ENST00000320152
3
ENSE00001344073
chr10:
25226296-25226113
184
PRDC1_HUMAN
52-113
62
2
A:52-110
B:52-113
59
62
1.5
ENST00000320152
5
ENSE00001344069
chr10:
25160992-25160927
66
PRDC1_HUMAN
114-135
22
2
A:121-135
B:114-135
15
22
1.6
ENST00000320152
6
ENSE00001702650
chr10:
25147338-25147321
18
PRDC1_HUMAN
136-141
6
2
A:136-141
B:136-141
6
6
1.7b
ENST00000320152
7b
ENSE00001344065
chr10:
25145924-25145842
83
PRDC1_HUMAN
142-169
28
2
A:142-169
B:142-169
28
28
1.8
ENST00000320152
8
ENSE00001344061
chr10:
25144293-25144247
47
PRDC1_HUMAN
169-185
17
2
A:169-185 (gaps)
B:169-185 (gaps)
17
17
1.9
ENST00000320152
9
ENSE00001344057
chr10:
25140393-25140317
77
PRDC1_HUMAN
185-210
26
2
A:185-210
B:185-210
26
26
1.10b
ENST00000320152
10b
ENSE00001649958
chr10:
25138820-25137554
1267
PRDC1_HUMAN
211-225
15
2
A:211-225
B:211-225
15
15
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2jbha_ (A:)
1b: SCOP_d2jbhb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2jbha_
A:
1b
d2jbhb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jbhA00 (A:7-225)
1b: CATH_2jbhB00 (B:9-225)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Human (Homo sapiens)
(19)
1a
2jbhA00
A:7-225
1b
2jbhB00
B:9-225
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pribosyltran_2jbhB01 (B:42-171)
1b: PFAM_Pribosyltran_2jbhB02 (B:42-171)
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(
)
Clan
:
PRTase-like
(59)
Family
:
Pribosyltran
(59)
Homo sapiens (Human)
(7)
1a
Pribosyltran-2jbhB01
B:42-171
1b
Pribosyltran-2jbhB02
B:42-171
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