PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2J9A
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (536 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
BLLAP IN COMPLEX WITH MICROGININ FR1
Authors
:
M. Kraft, C. Schleberger, J. Weckesser, G. E. Schulz
Date
:
06 Nov 06 (Deposition) - 06 Dec 06 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (6x)
Keywords
:
Hydrolase, Leucine Aminopeptidase, Acetylation, Aminopeptidase, Microginin, Microcystins, Hydrolase-Inhibitor Complex Metal-Binding, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kraft, C. Schleberger, J. Weckesser, G. E. Schulz
Binding Structure Of The Leucine Aminopeptidase Inhibitor Microginin Fr1.
Febs Lett. V. 580 6943 2006
[
close entry info
]
Hetero Components
(6, 10)
Info
All Hetero Components
1a: (2S,3R)-3-AMINO-2-HYDROXYDECANOIC ... (AHYa)
2a: CHLORIDE ION (CLa)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
4a: N-METHYLLEUCINE (MLEa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AHY
1
Ligand/Ion
(2S,3R)-3-AMINO-2-HYDROXYDECANOIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
4
MLE
1
Mod. Amino Acid
N-METHYLLEUCINE
5
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:333 , ARG A:336 , LEU A:360 , HOH D:2001
BINDING SITE FOR RESIDUE CL A1486
2
AC2
SOFTWARE
ASP A:255 , ASP A:332 , GLU A:334 , ZN A:1494 , AHY D:1
BINDING SITE FOR RESIDUE ZN A1493
3
AC3
SOFTWARE
LYS A:250 , ASP A:255 , ASP A:273 , GLU A:334 , ZN A:1493 , AHY D:1
BINDING SITE FOR RESIDUE ZN A1494
4
AC4
SOFTWARE
GLN A:79 , ASN A:81 , THR A:377 , ARG A:399 , MET A:400 , PRO A:401 , LEU A:402 , PHE A:403 , HOH A:2501
BINDING SITE FOR RESIDUE DMS A1491
5
AC5
SOFTWARE
GLU A:177 , VAL A:317 , ARG A:319
BINDING SITE FOR RESIDUE DMS A1492
6
AC6
SOFTWARE
LYS A:250 , ASP A:255 , LYS A:262 , ASP A:273 , ASP A:332 , GLU A:334 , THR A:359 , LEU A:360 , ARG A:425 , ALA A:451 , ZN A:1493 , ZN A:1494 , ALA D:2 , MLE D:3 , HOH D:2001
BINDING SITE FOR RESIDUE AHY D 1
7
AC7
SOFTWARE
ALA A:48 , TRP A:82 , ASN A:88 , PRO A:461 , HOH A:2027 , HOH A:2431 , HOH A:2498 , HOH A:2499
BINDING SITE FOR RESIDUE MPD A1487
8
AC8
SOFTWARE
HIS A:233 , TYR A:234 , PRO A:244 , ASN A:295 , VAL A:297 , HOH A:2322 , HOH A:2381
BINDING SITE FOR RESIDUE MPD A1488
9
AC9
SOFTWARE
PRO A:44 , LEU A:46 , THR A:51 , ARG A:52 , GLN A:99 , ASP A:102 , HOH A:2070
BINDING SITE FOR RESIDUE MPD A1489
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOSOL_AP (A:330-337)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOSOL_AP
PS00631
Cytosol aminopeptidase signature.
AMPL_BOVIN
362-369
1
A:330-337
[
close PROSITE info
]
Exons
(13, 13)
Info
All Exons
Exon 1.1 (A:1-2)
Exon 1.2 (A:3-41)
Exon 1.3 (A:41-59)
Exon 1.4 (A:60-95)
Exon 1.5 (A:95-148)
Exon 1.6 (A:148-203)
Exon 1.7 (A:203-256)
Exon 1.8 (A:256-298)
Exon 1.9 (A:298-327)
Exon 1.10 (A:328-362)
Exon 1.11 (A:362-388)
Exon 1.12 (A:389-425)
Exon 1.13 (A:425-485)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000007860
1
ENSBTAE00000063203
chr6:
37961794-37961895
102
AMPL_BOVIN
1-34
34
1
A:1-2
2
1.2
ENSBTAT00000007860
2
ENSBTAE00000063205
chr6:
37964129-37964244
116
AMPL_BOVIN
35-73
39
1
A:3-41
39
1.3
ENSBTAT00000007860
3
ENSBTAE00000308864
chr6:
37965550-37965604
55
AMPL_BOVIN
73-91
19
1
A:41-59
19
1.4
ENSBTAT00000007860
4
ENSBTAE00000063209
chr6:
37966063-37966168
106
AMPL_BOVIN
92-127
36
1
A:60-95
36
1.5
ENSBTAT00000007860
5
ENSBTAE00000063210
chr6:
37967574-37967733
160
AMPL_BOVIN
127-180
54
1
A:95-148
54
1.6
ENSBTAT00000007860
6
ENSBTAE00000063212
chr6:
37969197-37969361
165
AMPL_BOVIN
180-235
56
1
A:148-203
56
1.7
ENSBTAT00000007860
7
ENSBTAE00000063213
chr6:
37971885-37972043
159
AMPL_BOVIN
235-288
54
1
A:203-256
54
1.8
ENSBTAT00000007860
8
ENSBTAE00000063215
chr6:
37977709-37977833
125
AMPL_BOVIN
288-330
43
1
A:256-298
43
1.9
ENSBTAT00000007860
9
ENSBTAE00000063217
chr6:
37978975-37979063
89
AMPL_BOVIN
330-359
30
1
A:298-327
30
1.10
ENSBTAT00000007860
10
ENSBTAE00000308863
chr6:
37979919-37980021
103
AMPL_BOVIN
360-394
35
1
A:328-362
35
1.11
ENSBTAT00000007860
11
ENSBTAE00000063220
chr6:
37984212-37984291
80
AMPL_BOVIN
394-420
27
1
A:362-388
27
1.12
ENSBTAT00000007860
12
ENSBTAE00000063222
chr6:
37986042-37986151
110
AMPL_BOVIN
421-457
37
1
A:389-425
37
1.13
ENSBTAT00000007860
13
ENSBTAE00000063223
chr6:
37986603-37987164
562
AMPL_BOVIN
457-519
63
1
A:425-485
61
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2j9aa2 (A:1-159)
2a: SCOP_d2j9aa1 (A:160-485)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Macro domain-like
(42)
Superfamily
:
Macro domain-like
(42)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d2j9aa2
A:1-159
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Leucine aminopeptidase, C-terminal domain
(10)
Protein domain
:
automated matches
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
2a
d2j9aa1
A:160-485
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2j9aA02 (A:166-483)
2a: CATH_2j9aA01 (A:1-165)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bovine (Bos taurus)
(7)
1a
2j9aA02
A:166-483
Topology
:
Leucine Aminopeptidase, subunit E; domain 1
(21)
Homologous Superfamily
:
Leucine Aminopeptidase, subunit E, domain 1
(21)
Bovine (Bos taurus)
(4)
2a
2j9aA01
A:1-165
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (536 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2J9A
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help