PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2J8S
Asym. Unit
Info
Asym.Unit (545 KB)
Biol.Unit 1 (537 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
DRUG EXPORT PATHWAY OF MULTIDRUG EXPORTER ACRB REVEALED BY DARPIN INHIBITORS
Authors
:
G. Sennhauser, P. Amstutz, C. Briand, O. Storchenegger, M. G. Gruetter
Date
:
27 Oct 06 (Deposition) - 23 Jan 07 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Membrane Protein/Complex, Designed Ankyrin Repeat Protein, Multidrug Resistance Protein, Co-Crystallization, Antibiotic Resistance, Inner Membrane, Protein Complex, Membrane Protein, Rnd, Membrane, Inhibitor, Transport, Transmembrane, Drug-Efflux Pump, Transport Protein, Antibiotic Resistance/Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Sennhauser, P. Amstutz, C. Briand, O. Storchenegger, M. G. Grutter
Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors.
Plos Biol. V. 5 E7 2007
[
close entry info
]
Hetero Components
(2, 11)
Info
All Hetero Components
1a: DODECYL-BETA-D-MALTOSIDE (LMTa)
1b: DODECYL-BETA-D-MALTOSIDE (LMTb)
1c: DODECYL-BETA-D-MALTOSIDE (LMTc)
1d: DODECYL-BETA-D-MALTOSIDE (LMTd)
1e: DODECYL-BETA-D-MALTOSIDE (LMTe)
1f: DODECYL-BETA-D-MALTOSIDE (LMTf)
1g: DODECYL-BETA-D-MALTOSIDE (LMTg)
1h: DODECYL-BETA-D-MALTOSIDE (LMTh)
1i: DODECYL-BETA-D-MALTOSIDE (LMTi)
1j: DODECYL-BETA-D-MALTOSIDE (LMTj)
2a: DODECYL-ALPHA-D-MALTOSIDE (LMUa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LMT
10
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
2
LMU
1
Ligand/Ion
DODECYL-ALPHA-D-MALTOSIDE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:27 , LEU A:28 , LYS A:29 , VAL A:32 , VAL A:341 , LEU A:377 , LMU A:3049 , LMT B:3037
BINDING SITE FOR RESIDUE LMT A3046
02
AC2
SOFTWARE
GLY A:440 , GLY A:444 , MET A:447 , VAL A:448 , ALA A:451 , VAL A:883 , VAL A:884 , CYS A:887 , ALA A:890 , LEU A:891 , ARG C:8
BINDING SITE FOR RESIDUE LMT A3047
03
AC3
SOFTWARE
LEU A:449 , VAL A:452 , PHE A:453 , TYR A:467 , PHE A:556 , SER A:561 , PHE A:563 , GLY A:870 , ASN A:871 , GLN A:872 , TYR A:877 , ASN A:923 , LEU A:932 , ILE A:935
BINDING SITE FOR RESIDUE LMT A3048
04
AC4
SOFTWARE
ILE A:335 , HIS A:338 , VAL A:341 , LYS A:342 , LEU A:344 , VAL A:345 , ILE A:348 , ASP A:633 , TRP A:634 , ALA A:635 , LMT A:3046
BINDING SITE FOR RESIDUE LMU A3049
05
AC5
SOFTWARE
TYR B:527 , SER B:530 , GLY B:533 , ARG B:536 , ARG B:540 , TYR B:541 , ASP D:72
BINDING SITE FOR RESIDUE LMT B3035
06
AC6
SOFTWARE
ARG A:8 , PHE A:11 , ILE A:18 , ILE A:19 , GLY B:440 , VAL B:443 , GLY B:444 , CYS B:887 , ALA B:890 , LEU B:891
BINDING SITE FOR RESIDUE LMT B3036
07
AC7
SOFTWARE
ILE A:18 , LEU A:21 , LEU A:25 , LYS A:29 , LMT A:3046 , GLN B:872 , SER B:875 , LEU B:876 , ILE B:879 , VAL B:883 , LEU B:886 , CYS B:887
BINDING SITE FOR RESIDUE LMT B3037
08
AC8
SOFTWARE
GLU C:339 , ILE C:991 , SER C:992 , THR C:993
BINDING SITE FOR RESIDUE LMT C3042
09
AC9
SOFTWARE
SER C:530 , ILE C:534 , ARG C:536 , SER C:537 , ARG C:540 , TYR C:541 , LEU C:544 , ILE C:547
BINDING SITE FOR RESIDUE LMT C3043
10
BC1
SOFTWARE
LYS B:29 , PHE C:458 , ASN C:871 , SER C:875
BINDING SITE FOR RESIDUE LMT C3044
11
BC2
SOFTWARE
GLY C:97 , ALA C:457 , PHE C:458
BINDING SITE FOR RESIDUE LMT C3046
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(7, 26)
Info
all CATH domains
1a: CATH_2j8sA02 (A:38-132,A:813-820)
1b: CATH_2j8sB02 (B:38-132,B:813-820)
1c: CATH_2j8sC02 (C:38-132,C:813-820)
1d: CATH_2j8sA06 (A:569-673)
1e: CATH_2j8sB06 (B:569-673)
1f: CATH_2j8sC06 (C:569-673)
2a: CATH_2j8sA03 (A:133-179,A:276-328)
2b: CATH_2j8sB03 (B:133-179,B:276-328)
2c: CATH_2j8sC03 (C:133-179,C:276-328)
3a: CATH_2j8sA07 (A:674-723,A:821-864)
3b: CATH_2j8sC07 (C:674-723,C:821-864)
3c: CATH_2j8sB07 (B:674-723,B:821-868)
4a: CATH_2j8sA08 (A:724-812)
4b: CATH_2j8sB08 (B:724-812)
4c: CATH_2j8sC08 (C:724-812)
4d: CATH_2j8sA04 (A:180-275)
4e: CATH_2j8sB04 (B:180-275)
4f: CATH_2j8sC04 (C:180-275)
5a: CATH_2j8sD00 (D:11-166)
5b: CATH_2j8sE00 (E:14-166)
6a: CATH_2j8sB05 (B:511-568,B:869-1033)
6b: CATH_2j8sC05 (C:518-568,C:865-1040)
6c: CATH_2j8sA05 (A:518-568,A:865-1044)
7a: CATH_2j8sB01 (B:1-37,B:329-510)
7b: CATH_2j8sA01 (A:1-37,A:329-517)
7c: CATH_2j8sC01 (C:1-37,C:329-517)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
1a
2j8sA02
A:38-132,A:813-820
1b
2j8sB02
B:38-132,B:813-820
1c
2j8sC02
C:38-132,C:813-820
1d
2j8sA06
A:569-673
1e
2j8sB06
B:569-673
1f
2j8sC06
C:569-673
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain like
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
2a
2j8sA03
A:133-179,A:276-328
2b
2j8sB03
B:133-179,B:276-328
2c
2j8sC03
C:133-179,C:276-328
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
3a
2j8sA07
A:674-723,A:821-864
3b
2j8sC07
C:674-723,C:821-864
3c
2j8sB07
B:674-723,B:821-868
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
4a
2j8sA08
A:724-812
4b
2j8sB08
B:724-812
4c
2j8sC08
C:724-812
4d
2j8sA04
A:180-275
4e
2j8sB04
B:180-275
4f
2j8sC04
C:180-275
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(1)
5a
2j8sD00
D:11-166
5b
2j8sE00
E:14-166
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
6a
2j8sB05
B:511-568,B:869-1033
6b
2j8sC05
C:518-568,C:865-1040
6c
2j8sA05
A:518-568,A:865-1044
Architecture
:
Up-down Bundle
(3216)
Topology
:
Multidrug efflux transporter AcrB transmembrane fold
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB transmembrane domain
(27)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
7a
2j8sB01
B:1-37,B:329-510
7b
2j8sA01
A:1-37,A:329-517
7c
2j8sC01
C:1-37,C:329-517
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (545 KB)
Header - Asym.Unit
Biol.Unit 1 (537 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2J8S
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
