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2J7Z
Asym. Unit
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Asym.Unit (28 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RECOMBINANT HUMAN STROMAL CELL-DERIVED FACTOR-1ALPHA
Authors
:
E. K. Ryu, T. G. Kim, T. H. Kwon, I. D. Jung, D. W. Ryu, Y. -M. Park, K. Ahn, C. Ban
Date
:
18 Oct 06 (Deposition) - 23 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Growth Factor, Alternative Splicing, Cxcr4, Cytokine, Refolding, Chemotaxis, Sdf-1Alpha
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. K. Ryu, T. G. Kim, T. H. Kwon, I. D. Jung, D. Ryu, Y. Park, J. Kim, K. H. Ahn, C. Ban
Crystal Structure Of Recombinant Human Stromal Cell-Derived Factor-1Alpha.
Proteins V. 67 1193 2007
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(3, 6)
Info
All Exons
Exon 1.3b (A:1-39 | B:1-39)
Exon 1.4a (A:39-68 | B:39-68)
Exon 1.6a (A:68-68 | B:68-68)
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1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.6a
4: Boundary 1.6a/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000374429
2a
ENSE00001463492
chr10:
44880540-44880393
148
SDF1_HUMAN
1-21
21
0
-
-
1.3b
ENST00000374429
3b
ENSE00000701629
chr10:
44876328-44876211
118
SDF1_HUMAN
21-60
40
2
A:1-39
B:1-39
39
39
1.4a
ENST00000374429
4a
ENSE00001463490
chr10:
44874171-44874085
87
SDF1_HUMAN
60-89
30
2
A:39-68
B:39-68
30
30
1.6a
ENST00000374429
6a
ENSE00001902365
chr10:
44868791-44865613
3179
SDF1_HUMAN
89-93
5
2
A:68-68
B:68-68
1
1
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d2j7za_ (A:)
1b: SCOP_d2j7zb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
Stromal cell-derived factor-1 (SDF-1)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2j7za_
A:
1b
d2j7zb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_2j7zA00 (A:1-68)
1b: CATH_2j7zB00 (B:1-68)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Homo sapiens. Organism_taxid: 9606.
(1)
1a
2j7zA00
A:1-68
1b
2j7zB00
B:1-68
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Asymmetric Unit 1
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