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2J7X
Asym. Unit
Info
Asym.Unit (47 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX WITH LXXLL MOTIF FROM NCOA5
Authors
:
A. C. W. Pike, A. M. Brzozowski, R. E. Hubbard, J. Walton, T. Bonn, A. -G. T O. Engstrom, J. Ljunggren, J. -A. Gustaffson, M. Carlquist
Date
:
17 Oct 06 (Deposition) - 07 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zinc-Finger, Nuclear Receptor, Phosphorylation, Steroid-Binding, Glycoprotein, Transcription Regulation, Transcription,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. W. Pike, A. M. Brzozowski, R. E. Hubbard, J. Walton, T. Bonn, A. -G. Thorsell, O. Engstrom, J. Ljunggren, J. -A. Gustaffson, M. Carlquist
Structure Of Agonist-Bound Estrogen Receptor Beta Lbd In Complex With Lxxll Motif From Ncoa5
To Be Published
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: ESTRADIOL (ESTa)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
EST
1
Ligand/Ion
ESTRADIOL
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:278 , LEU A:279 , HOH A:2096
BINDING SITE FOR RESIDUE SO4 A1459
2
AC2
SOFTWARE
ASN A:234 , VAL A:235 , GLU A:260 , ARG A:301 , PHE A:311 , PRO A:313 , EDO A:1456 , HOH A:2097
BINDING SITE FOR RESIDUE BCT A1460
3
AC3
SOFTWARE
MET A:250 , LEU A:253 , GLU A:260 , MET A:291 , LEU A:294 , ARG A:301 , PHE A:311 , HIS A:430 , LEU A:431 , HOH A:2015
BINDING SITE FOR RESIDUE EST A1454
4
AC4
SOFTWARE
GLU A:231 , TRP A:300 , ARG A:301 , TYR A:352 , LYS A:356 , EDO A:1456 , HOH A:2059
BINDING SITE FOR RESIDUE EDO A1455
5
AC5
SOFTWARE
ASN A:234 , GLU A:260 , EDO A:1455 , BCT A:1460 , HOH A:2094
BINDING SITE FOR RESIDUE EDO A1456
6
AC6
SOFTWARE
ASN A:234 , TRP A:300 , HOH A:2095
BINDING SITE FOR RESIDUE EDO A1457
7
AC7
SOFTWARE
ASP A:258 , TYR A:443
BINDING SITE FOR RESIDUE EDO A1458
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(1, 1)
Info
All Exons
Exon 1.7 (B:342-352)
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000290231
1
ENSE00001525079
chr20:
44718591-44718456
136
NCOA5_HUMAN
-
0
0
-
-
1.2
ENST00000290231
2
ENSE00001753187
chr20:
44708092-44708026
67
NCOA5_HUMAN
1-13
13
0
-
-
1.3
ENST00000290231
3
ENSE00001665164
chr20:
44699175-44698849
327
NCOA5_HUMAN
13-122
110
0
-
-
1.4
ENST00000290231
4
ENSE00000662541
chr20:
44697277-44697141
137
NCOA5_HUMAN
122-168
47
0
-
-
1.5
ENST00000290231
5
ENSE00002173229
chr20:
44695820-44695694
127
NCOA5_HUMAN
168-210
43
0
-
-
1.6
ENST00000290231
6
ENSE00001672871
chr20:
44693867-44693668
200
NCOA5_HUMAN
210-277
68
0
-
-
1.7
ENST00000290231
7
ENSE00001612661
chr20:
44692319-44691999
321
NCOA5_HUMAN
277-384
108
1
B:342-352
11
1.8
ENST00000290231
8
ENSE00001457437
chr20:
44691528-44689624
1905
NCOA5_HUMAN
384-579
196
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2j7xa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d2j7xa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2j7xA00 (A:217-453)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Rat (Rattus norvegicus)
(10)
1a
2j7xA00
A:217-453
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (47 KB)
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