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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2J7T
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 BOUND TO SU11274
Authors
:
A. C. W. Pike, P. Rellos, O. Fedorov, S. Das, J. Debreczeni, F. Sobott, S. P. Savitsky, J. Eswaran, A. P. Turnbull, E. Papagrigoriou, E. Ugochuk F. Gorrec, C. C. Umeano, F. Von Delft, C. H. Arrowsmith, A. Edwards, J. M. Sundstrom, S. Knapp
Date
:
17 Oct 06 (Deposition) - 07 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Kinase, Transferase, Atp-Binding, Cell Cycle Progression, Phosphorylation, Disease Mutation, Nucleotide- Binding, Lymphocyte Oriented Kinase (Lok), Serine/Threonine- Protein Kinase, Serine/Threonine Kinase (Stk10A)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. W. Pike, P. Rellos, F. H. Niesen, A. Turnbull, A. W. Oliver, S. A. Parker, B. E. Turk, L. H. Pearl, S. Knapp
Activation Segment Dimerization: A Mechanism For Kinase Autophosphorylation Of Non-Consensus Sites.
Embo J. V. 27 704 2008
[
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: (3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DI... (274a)
2a: ACETATE ION (ACTa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
274
1
Ligand/Ion
(3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DIMETHYL-4-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-1H-PYRROL-2-YL}METHYLENE)-N-METHYL-2-OXOINDOLINE-5-SULFONAMIDE
2
ACT
1
Ligand/Ion
ACETATE ION
3
CA
7
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:2013 , HOH A:2014 , HOH A:2016 , HOH A:2019 , HOH A:2058
BINDING SITE FOR RESIDUE CA A 332
2
AC2
SOFTWARE
HOH A:2020 , HOH A:2051 , HOH A:2059 , HOH A:2129 , HOH A:2130
BINDING SITE FOR RESIDUE CA A 333
3
AC3
SOFTWARE
GLU A:168 , GLU A:316 , HOH A:2054 , HOH A:2125 , HOH A:2127 , HOH A:2128
BINDING SITE FOR RESIDUE CA A1318
4
AC4
SOFTWARE
GLU A:313 , GLU A:316 , HOH A:2055 , HOH A:2128
BINDING SITE FOR RESIDUE CA A1319
5
AC5
SOFTWARE
GLU A:234 , HOH A:2078 , HOH A:2079 , HOH A:2080
BINDING SITE FOR RESIDUE CA A1320
6
AC6
SOFTWARE
GLN A:135 , HOH A:2039 , HOH A:2108
BINDING SITE FOR RESIDUE CA A1321
7
AC7
SOFTWARE
GLU A:124 , GLU A:313 , HOH A:2028 , HOH A:2126
BINDING SITE FOR RESIDUE CA A1322
8
AC8
SOFTWARE
THR A:298 , VAL A:314
BINDING SITE FOR RESIDUE ACT A1323
9
AC9
SOFTWARE
LEU A:42 , ALA A:63 , GLU A:81 , ILE A:108 , ILE A:110 , GLU A:111 , PHE A:112 , CYS A:113 , GLY A:116 , ALA A:117 , LEU A:164 , ASP A:175 , HOH A:2007 , HOH A:2129
BINDING SITE FOR RESIDUE 274 A1324
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041131 (R268C, chain A, )
2: VAR_023827 (K277E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041131
R
268
C
STK10_HUMAN
Polymorphism
35826078
A
R
268
C
2
UniProt
VAR_023827
K
277
E
STK10_HUMAN
Disease (TGCT)
---
A
K
277
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:42-65)
2: PROTEIN_KINASE_ST (A:153-165)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
STK10_HUMAN
42-65
1
A:42-65
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
STK10_HUMAN
153-165
1
A:153-165
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.1 (A:25-52)
Exon 1.2a (A:53-107 (gaps))
Exon 1.3 (A:108-124)
Exon 1.4 (A:124-174)
Exon 1.7d (A:174-198 (gaps))
Exon 1.8e (A:198-263)
Exon 1.9b (A:263-290)
Exon 1.10b (A:291-317)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.7d
6: Boundary 1.7d/1.8e
7: Boundary 1.8e/1.9b
8: Boundary 1.9b/1.10b
9: Boundary 1.10b/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000176763
1
ENSE00000812846
chr5:
171615390-171614891
500
STK10_HUMAN
1-52
52
1
A:25-52
28
1.2a
ENST00000176763
2a
ENSE00000769446
chr5:
171583792-171583628
165
STK10_HUMAN
53-107
55
1
A:53-107 (gaps)
55
1.3
ENST00000176763
3
ENSE00000769445
chr5:
171554425-171554377
49
STK10_HUMAN
108-124
17
1
A:108-124
17
1.4
ENST00000176763
4
ENSE00001003616
chr5:
171544634-171544485
150
STK10_HUMAN
124-174
51
1
A:124-174
51
1.7d
ENST00000176763
7d
ENSE00001165742
chr5:
171534856-171534784
73
STK10_HUMAN
174-198
25
1
A:174-198 (gaps)
25
1.8e
ENST00000176763
8e
ENSE00001165735
chr5:
171533818-171533624
195
STK10_HUMAN
198-263
66
1
A:198-263
66
1.9b
ENST00000176763
9b
ENSE00000441213
chr5:
171532741-171532660
82
STK10_HUMAN
263-290
28
1
A:263-290
28
1.10b
ENST00000176763
10b
ENSE00000973051
chr5:
171523564-171523430
135
STK10_HUMAN
291-335
45
1
A:291-317
27
1.11a
ENST00000176763
11a
ENSE00000973052
chr5:
171520964-171520416
549
STK10_HUMAN
336-518
183
0
-
-
1.13
ENST00000176763
13
ENSE00001507188
chr5:
171517366-171517236
131
STK10_HUMAN
519-562
44
0
-
-
1.14
ENST00000176763
14
ENSE00001507187
chr5:
171510088-171509965
124
STK10_HUMAN
562-603
42
0
-
-
1.15a
ENST00000176763
15a
ENSE00000973055
chr5:
171509509-171509330
180
STK10_HUMAN
604-663
60
0
-
-
1.16a
ENST00000176763
16a
ENSE00001003610
chr5:
171491816-171491724
93
STK10_HUMAN
664-694
31
0
-
-
1.18c
ENST00000176763
18c
ENSE00001003619
chr5:
171488272-171488143
130
STK10_HUMAN
695-738
44
0
-
-
1.19b
ENST00000176763
19b
ENSE00001084482
chr5:
171484477-171484353
125
STK10_HUMAN
738-779
42
0
-
-
1.20b
ENST00000176763
20b
ENSE00000973060
chr5:
171482780-171482592
189
STK10_HUMAN
780-842
63
0
-
-
1.21
ENST00000176763
21
ENSE00000973061
chr5:
171481698-171481573
126
STK10_HUMAN
843-884
42
0
-
-
1.22b
ENST00000176763
22b
ENSE00000973062
chr5:
171480046-171479933
114
STK10_HUMAN
885-922
38
0
-
-
1.24c
ENST00000176763
24c
ENSE00001003620
chr5:
171472026-171469077
2950
STK10_HUMAN
923-968
46
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2j7ta_ (A:)
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Folds
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Superfamilies
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2j7ta_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2j7tA01 (A:25-112)
2a: CATH_2j7tA02 (A:113-317)
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(
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(
)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2j7tA01
A:25-112
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2j7tA02
A:113-317
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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