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2J7P
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
GMPPNP-STABILIZED NG DOMAIN COMPLEX OF THE SRP GTPASES FFH AND FTSY
Authors
:
D. M. Freymann
Date
:
14 Oct 06 (Deposition) - 11 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Keywords
:
Inner Membrane, Membrane Targeting, Nucleotide-Binding, Gmppnp, Gdp-Pnp, Signal Recognition Particle, Rna-Binding, Gtp-Binding, Cell Division, Signal Sequence Recognition, Srp, Ffh, Ftsy, Gtpase, Membrane, Cell Cycle, Cell Division/Complex, Signal Recognition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Gawronski-Salerno, D. M. Freymann
Structure Of The Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy.
J. Struct. Biol. V. 158 122 2007
[
close entry info
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Hetero Components
(5, 32)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPd)
3a: IODIDE ION (IODa)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
3j: IODIDE ION (IODj)
3k: IODIDE ION (IODk)
3l: IODIDE ION (IODl)
3m: IODIDE ION (IODm)
3n: IODIDE ION (IODn)
3o: IODIDE ION (IODo)
3p: IODIDE ION (IODp)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
GNP
4
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
IOD
16
Ligand/Ion
IODIDE ION
4
K
2
Ligand/Ion
POTASSIUM ION
5
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:181
BINDING SITE FOR RESIDUE IOD A1299
02
AC2
SOFTWARE
ARG A:286 , HOH A:2147 , HOH A:2151
BINDING SITE FOR RESIDUE IOD A1300
03
AC3
SOFTWARE
HOH A:2103 , HOH A:2107
BINDING SITE FOR RESIDUE IOD A1302
04
AC4
SOFTWARE
THR A:112 , GNP A:1400 , HOH A:2073 , HOH A:2084 , HOH A:2100
BINDING SITE FOR RESIDUE MG A1401
05
AC5
SOFTWARE
HOH A:2016
BINDING SITE FOR RESIDUE IOD B1298
06
AC6
SOFTWARE
ARG B:35 , MET B:39
BINDING SITE FOR RESIDUE IOD B1299
07
AC7
SOFTWARE
ARG B:181
BINDING SITE FOR RESIDUE IOD B1300
08
AC8
SOFTWARE
HOH B:2159 , HOH B:2162
BINDING SITE FOR RESIDUE IOD B1301
09
AC9
SOFTWARE
HOH B:2085
BINDING SITE FOR RESIDUE IOD B1302
10
BC1
SOFTWARE
THR B:112 , GNP B:1400 , HOH B:2087 , HOH B:2122 , HOH B:2165
BINDING SITE FOR RESIDUE MG B1401
11
BC2
SOFTWARE
SER D:47 , ARG D:271
BINDING SITE FOR RESIDUE IOD D1308
12
BC3
SOFTWARE
GLY D:25 , HOH D:2017
BINDING SITE FOR RESIDUE IOD D1309
13
BC4
SOFTWARE
GLU D:66 , LYS D:69
BINDING SITE FOR RESIDUE IOD D1310
14
BC5
SOFTWARE
THR D:116 , GNP D:1400 , HOH D:2047 , HOH D:2054 , HOH D:2072
BINDING SITE FOR RESIDUE MG D1401
15
BC6
SOFTWARE
LEU D:257 , GLY D:259 , ALA D:261 , HOH D:2027 , HOH D:2106 , HOH D:2111
BINDING SITE FOR RESIDUE K D1402
16
BC7
SOFTWARE
LYS E:199 , ASN E:201
BINDING SITE FOR RESIDUE IOD E1308
17
BC8
SOFTWARE
THR E:116 , GNP E:1400 , HOH E:2037 , HOH E:2042 , HOH E:2061
BINDING SITE FOR RESIDUE MG E1401
18
BC9
SOFTWARE
LEU E:257 , GLY E:259 , ALA E:261 , HOH E:2020 , HOH E:2091 , HOH E:2095
BINDING SITE FOR RESIDUE K E1402
19
CC1
SOFTWARE
ARG A:128 , ARG A:181
BINDING SITE FOR RESIDUE EDO A1297
20
CC2
SOFTWARE
GLN A:137 , GLU D:284 , HOH D:2117
BINDING SITE FOR RESIDUE EDO A1298
21
CC3
SOFTWARE
GLN A:107 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , THR A:113 , LYS A:117 , ASP A:135 , ARG A:138 , GLN A:144 , GLY A:190 , LYS A:246 , ASP A:248 , GLY A:271 , VAL A:272 , SER A:273 , GLU A:274 , MG A:1401 , HOH A:2069 , HOH A:2073 , HOH A:2075 , HOH A:2084 , HOH A:2100 , HOH A:2152 , ASN D:111 , ARG D:142 , LEU D:196 , GNP D:1400 , HOH D:2124
BINDING SITE FOR RESIDUE GNP A1400
22
CC4
SOFTWARE
GLN B:107 , GLY B:108 , SER B:109 , GLY B:110 , LYS B:111 , THR B:112 , THR B:113 , LYS B:117 , ARG B:138 , GLN B:144 , GLY B:190 , LYS B:246 , ASP B:248 , GLY B:271 , VAL B:272 , SER B:273 , GLU B:274 , MG B:1401 , HOH B:2079 , HOH B:2081 , HOH B:2087 , HOH B:2088 , HOH B:2092 , HOH B:2122 , HOH B:2164 , HOH B:2165 , ASN E:111 , ARG E:142 , LEU E:196 , GNP E:1400 , HOH E:2029
BINDING SITE FOR RESIDUE GNP B1400
23
CC5
SOFTWARE
PRO D:291 , PHE D:292 , ASP D:293 , PHE D:297 , HOH D:2123
BINDING SITE FOR RESIDUE EDO D1306
24
CC6
SOFTWARE
GLN A:193 , GLY D:259 , THR D:260 , ALA D:261 , HOH D:2105
BINDING SITE FOR RESIDUE EDO D1307
25
CC7
SOFTWARE
GLN A:107 , ARG A:138 , GNP A:1400 , ASN D:111 , GLY D:112 , VAL D:113 , GLY D:114 , LYS D:115 , THR D:116 , THR D:117 , LYS D:121 , ARG D:142 , GLN D:148 , GLY D:194 , LYS D:256 , ASP D:258 , GLY D:281 , VAL D:282 , GLY D:283 , GLU D:284 , MG D:1401 , HOH D:2038 , HOH D:2047 , HOH D:2049 , HOH D:2054 , HOH D:2072 , HOH D:2124 , HOH D:2125
BINDING SITE FOR RESIDUE GNP D1400
26
CC8
SOFTWARE
LEU B:106 , GLN B:193 , GLY E:259 , THR E:260 , ALA E:261 , HOH E:2090
BINDING SITE FOR RESIDUE EDO E1306
27
CC9
SOFTWARE
SER E:157 , PRO E:159
BINDING SITE FOR RESIDUE EDO E1307
28
DC1
SOFTWARE
GLN B:107 , ARG B:138 , GNP B:1400 , HOH B:2092 , ASN E:111 , GLY E:112 , VAL E:113 , GLY E:114 , LYS E:115 , THR E:116 , THR E:117 , LYS E:121 , ARG E:142 , GLN E:148 , GLY E:194 , LYS E:256 , ASP E:258 , GLY E:281 , VAL E:282 , GLY E:283 , GLU E:284 , MG E:1401 , HOH E:2036 , HOH E:2037 , HOH E:2042 , HOH E:2061 , HOH E:2111 , HOH E:2112
BINDING SITE FOR RESIDUE GNP E1400
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SRP54 (A:266-279,B:266-279,D:276-289,E:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
2
A:266-279
B:266-279
FTSY_THEAQ
276-289
2
D:276-289
E:276-289
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d2j7pd1 (D:22-78)
1b: SCOP_d2j7pe1 (E:27-78)
2a: SCOP_d2j7pa1 (A:3-88)
2b: SCOP_d2j7pb1 (B:4-88)
3a: SCOP_d2j7pd2 (D:97-303)
3b: SCOP_d2j7pe2 (E:97-303)
4a: SCOP_d2j7pa2 (A:89-294)
4b: SCOP_d2j7pb2 (B:89-294)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Thermus aquaticus [TaxId: 271]
(3)
1a
d2j7pd1
D:22-78
1b
d2j7pe1
E:27-78
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
2a
d2j7pa1
A:3-88
2b
d2j7pb1
B:4-88
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
automated matches
(19)
Thermus aquaticus [TaxId: 271]
(3)
3a
d2j7pd2
D:97-303
3b
d2j7pe2
E:97-303
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
4a
d2j7pa2
A:89-294
4b
d2j7pb2
B:89-294
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2j7pA02 (A:91-281)
1b: CATH_2j7pB02 (B:91-281)
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Architectures
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271.
(14)
1a
2j7pA02
A:91-281
1b
2j7pB02
B:91-281
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Chain D
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