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2J7A
Biol. Unit 3
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (424 KB)
Biol.Unit 2 (423 KB)
Biol.Unit 3 (423 KB)
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Title
:
CRYSTAL STRUCTURE OF CYTOCHROME C NITRITE REDUCTASE NRFHA COMPLEX FROM DESULFOVIBRIO VULGARIS
Authors
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
Date
:
06 Oct 06 (Deposition) - 06 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Quinol Dehydrogenase, Cytochrome C Nitrite Reductase, Nrfa, Nrfh, Napc/Nirt Family, Membrane Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
X-Ray Structure Of The Membrane-Bound Cytochrome C Quinol Dehydrogenase Nrfh Reveals Novel Haem Coordination.
Embo J. V. 25 5951 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
3ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
3ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
3ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
3ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
3af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
3ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
3ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
3ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
3aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
3ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
3al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
3am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
3an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
3ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
3ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
3aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
3ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
3as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
3at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
3au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
3av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
3aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
3ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
3ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
3az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
3bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
3bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
3bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
3be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
3bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
3bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
3bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
3bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
3bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
3bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
3bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
3bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
3bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
3bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
3bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
3bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
3br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
3bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
3bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
3bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
3bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
3bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
3bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
3by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
3bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
3cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
3cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
3cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
3ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
3cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
3i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
3j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
3k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
3l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
3n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
3o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
3r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
3t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
3v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
3w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
3x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
3y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
3z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
4a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4b: DODECYL-BETA-D-MALTOSIDE (LMTb)
4c: DODECYL-BETA-D-MALTOSIDE (LMTc)
4d: DODECYL-BETA-D-MALTOSIDE (LMTd)
4e: DODECYL-BETA-D-MALTOSIDE (LMTe)
4f: DODECYL-BETA-D-MALTOSIDE (LMTf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
28
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
LMT
2
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: JC7 (SOFTWARE)
11: JC8 (SOFTWARE)
12: JC9 (SOFTWARE)
13: KC1 (SOFTWARE)
14: KC2 (SOFTWARE)
15: KC3 (SOFTWARE)
16: KC4 (SOFTWARE)
17: KC5 (SOFTWARE)
18: KC6 (SOFTWARE)
19: KC7 (SOFTWARE)
20: KC8 (SOFTWARE)
21: KC9 (SOFTWARE)
22: LC1 (SOFTWARE)
23: LC2 (SOFTWARE)
24: LC3 (SOFTWARE)
25: LC4 (SOFTWARE)
26: LC5 (SOFTWARE)
27: LC6 (SOFTWARE)
28: LC7 (SOFTWARE)
29: LC8 (SOFTWARE)
30: LC9 (SOFTWARE)
31: MC1 (SOFTWARE)
32: MC2 (SOFTWARE)
33: MC3 (SOFTWARE)
34: MC4 (SOFTWARE)
35: MC5 (SOFTWARE)
36: MC6 (SOFTWARE)
37: MC7 (SOFTWARE)
38: MC8 (SOFTWARE)
39: MC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
GLU M:235 , TYR M:236 , LYS M:295 , GLN M:297 , HOH M:2103 , HOH M:2104
BINDING SITE FOR RESIDUE CA M1006
02
CC2
SOFTWARE
GLY M:78 , GLU M:117 , ALA M:118 , HEM M:1003 , HEM M:1004 , HOH M:2200
BINDING SITE FOR RESIDUE CA M1007
03
CC3
SOFTWARE
GLU N:235 , TYR N:236 , LYS N:295 , GLN N:297 , HOH N:2112 , HOH N:2113
BINDING SITE FOR RESIDUE CA N1006
04
CC4
SOFTWARE
GLY N:78 , GLU N:117 , ALA N:118 , HEM N:1003 , HEM N:1004
BINDING SITE FOR RESIDUE CA N1007
05
CC5
SOFTWARE
HEM O:1003 , HOH P:2111 , HEM R:1003 , HEM R:1004
BINDING SITE FOR RESIDUE ACT O1006
06
CC6
SOFTWARE
GLU P:235 , TYR P:236 , LYS P:295 , GLN P:297 , HOH P:2094 , HOH P:2098
BINDING SITE FOR RESIDUE CA P1006
07
CC7
SOFTWARE
GLY P:78 , GLU P:117 , ALA P:118 , HEM P:1003 , HEM P:1004
BINDING SITE FOR RESIDUE CA P1007
08
CC8
SOFTWARE
GLU Q:235 , TYR Q:236 , LYS Q:295 , GLN Q:297 , HOH Q:2062
BINDING SITE FOR RESIDUE CA Q1006
09
CC9
SOFTWARE
GLY Q:78 , GLU Q:117 , ALA Q:118 , HEM Q:1003 , HEM Q:1004
BINDING SITE FOR RESIDUE CA Q1007
10
JC7
SOFTWARE
TYR M:115 , ARG M:116 , ALA M:118 , PHE M:128 , ILE M:131 , ARG M:133 , CYS M:147 , CYS M:150 , LYS M:151 , CYS M:232 , HIS M:233 , TYR M:236 , HIS M:298 , ASN M:429 , HEM M:1003 , HOH M:2044 , HOH M:2045 , HOH M:2193 , HOH M:2194
BINDING SITE FOR RESIDUE HEM M1001
11
JC8
SOFTWARE
TYR M:39 , PHE M:57 , GLN M:60 , TYR M:61 , TYR M:64 , GLY M:186 , CYS M:187 , CYS M:190 , HIS M:191 , MET M:196 , LEU M:198 , ARG M:221 , ARG M:225 , MET M:321 , SER M:333 , HIS M:335 , TRP M:337 , HEM M:1003 , HOH M:2116 , HOH M:2195 , HOH M:2196 , VAL O:127
BINDING SITE FOR RESIDUE HEM M1002
12
JC9
SOFTWARE
GLY M:78 , SER M:79 , ALA M:118 , ARG M:119 , GLY M:120 , HIS M:121 , TYR M:123 , ALA M:124 , ASP M:127 , CYS M:150 , ILE M:185 , THR M:189 , VAL M:228 , CYS M:229 , CYS M:232 , HIS M:233 , HIS M:320 , TRP M:337 , THR M:338 , HEM M:1001 , HEM M:1002 , HEM M:1004 , CA M:1007 , HOH M:2046 , HOH M:2197
BINDING SITE FOR RESIDUE HEM M1003
13
KC1
SOFTWARE
THR M:74 , LYS M:77 , GLY M:78 , GLU M:117 , HIS M:233 , GLU M:300 , TYR M:301 , TRP M:304 , HIS M:309 , THR M:315 , CYS M:316 , CYS M:319 , HIS M:320 , SER M:339 , MET M:341 , GLN M:369 , ASN M:429 , PHE M:433 , HIS M:434 , HEM M:1003 , CA M:1007 , HOH M:2198 , HOH M:2199 , HOH M:2200
BINDING SITE FOR RESIDUE HEM M1004
14
KC2
SOFTWARE
THR M:308 , HIS M:309 , ALA M:312 , VAL M:314 , ASP M:318 , CYS M:319 , PRO M:340 , ALA M:348 , CYS M:349 , CYS M:352 , HIS M:353 , ARG M:364 , VAL M:365 , HOH M:2137 , HOH M:2201 , HOH M:2202 , HOH M:2203 , HIS N:353 , LYS N:356 , HEM N:1005 , HOH N:2139 , ARG O:141 , MET O:148
BINDING SITE FOR RESIDUE HEM M1005
15
KC3
SOFTWARE
TYR N:115 , ARG N:116 , ALA N:118 , PHE N:128 , ILE N:131 , ARG N:133 , CYS N:147 , CYS N:150 , LYS N:151 , CYS N:232 , HIS N:233 , TYR N:236 , HIS N:298 , ASN N:429 , HEM N:1003 , HOH N:2042 , HOH N:2060 , HOH N:2198 , HOH N:2199 , HOH N:2200
BINDING SITE FOR RESIDUE HEM N1001
16
KC4
SOFTWARE
TYR N:39 , PHE N:57 , GLN N:60 , TYR N:64 , GLY N:186 , CYS N:187 , CYS N:190 , HIS N:191 , MET N:196 , LEU N:198 , ARG N:221 , ARG N:225 , MET N:321 , TYR N:323 , ILE N:332 , SER N:333 , HIS N:335 , TRP N:337 , HEM N:1003 , HOH N:2125 , ALA O:157
BINDING SITE FOR RESIDUE HEM N1002
17
KC5
SOFTWARE
GLY N:78 , SER N:79 , ALA N:118 , ARG N:119 , HIS N:121 , TYR N:123 , ALA N:124 , ASP N:127 , CYS N:150 , LYS N:151 , ILE N:185 , THR N:189 , VAL N:228 , CYS N:229 , CYS N:232 , HIS N:233 , HIS N:320 , TRP N:337 , THR N:338 , HEM N:1001 , HEM N:1002 , HEM N:1004 , CA N:1007 , HOH N:2020 , HOH N:2044 , HOH N:2072 , HOH N:2201
BINDING SITE FOR RESIDUE HEM N1003
18
KC6
SOFTWARE
THR N:74 , LYS N:77 , GLY N:78 , GLU N:117 , HIS N:233 , TYR N:301 , TRP N:304 , HIS N:309 , VAL N:314 , THR N:315 , CYS N:316 , CYS N:319 , HIS N:320 , SER N:339 , PRO N:340 , MET N:341 , GLN N:369 , ASN N:429 , PHE N:433 , HIS N:434 , HEM N:1003 , HEM N:1005 , CA N:1007 , HOH N:2201 , HOH N:2202
BINDING SITE FOR RESIDUE HEM N1004
19
KC7
SOFTWARE
THR M:308 , HIS M:353 , LYS M:356 , HEM M:1005 , HIS N:309 , VAL N:314 , ASP N:318 , CYS N:319 , PRO N:340 , ALA N:348 , CYS N:349 , CYS N:352 , HIS N:353 , ARG N:364 , VAL N:365 , HEM N:1004 , HOH N:2203 , HOH N:2204 , HOH N:2205 , HOH N:2206 , MET O:148 , LYS O:149
BINDING SITE FOR RESIDUE HEM N1005
20
KC8
SOFTWARE
THR O:37 , CYS O:43 , CYS O:46 , ILE O:48 , MET O:49 , ASN O:67 , HIS O:70 , ASP O:89 , VAL O:90 , MET O:92 , ASN O:93 , PRO O:98 , LEU O:103 , ALA O:104 , GLY O:105 , THR O:108 , HEM O:1002
BINDING SITE FOR RESIDUE HEM O1001
21
KC9
SOFTWARE
CYS O:43 , MET O:49 , VAL O:52 , HIS O:56 , HIS O:61 , SER O:65 , CYS O:66 , CYS O:69 , HIS O:70 , ALA O:104 , LYS O:109 , VAL O:112 , THR O:137 , VAL O:143 , GLN O:144 , HIS O:145 , HEM O:1001 , HOH O:2022 , HOH O:2040 , HOH O:2049
BINDING SITE FOR RESIDUE HEM O1002
22
LC1
SOFTWARE
GLY O:60 , HIS O:61 , ASP O:68 , VAL O:112 , ASN O:115 , CYS O:116 , CYS O:119 , HIS O:120 , HIS O:140 , HEM O:1004 , ACT O:1006 , HOH O:2011 , HOH O:2050 , LYS P:329 , CYS R:119 , HIS R:120 , MET R:122 , THR R:123
BINDING SITE FOR RESIDUE HEM O1003
23
LC2
SOFTWARE
ASP M:318 , TYR M:323 , THR M:324 , ARG M:325 , LYS M:331 , GLN M:351 , CYS O:116 , HIS O:120 , ASN O:124 , SER O:129 , LYS O:133 , CYS O:136 , CYS O:139 , HIS O:140 , HEM O:1003 , ARG P:325 , LYS P:329 , HEM R:1004
BINDING SITE FOR RESIDUE HEM O1004
24
LC3
SOFTWARE
GLY M:26 , SER M:28 , ASP M:29 , VAL M:30 , HIS O:73 , ASN O:74 , LEU O:75 , ALA O:118 , LYS R:35
BINDING SITE FOR RESIDUE LMT O1005
25
LC4
SOFTWARE
TYR P:115 , ARG P:116 , ALA P:118 , PHE P:128 , ILE P:131 , ARG P:133 , CYS P:147 , CYS P:150 , LYS P:151 , CYS P:232 , HIS P:233 , TYR P:236 , HIS P:298 , ASN P:429 , HEM P:1003 , HOH P:2044 , HOH P:2045 , HOH P:2101 , HOH P:2166 , HOH P:2167
BINDING SITE FOR RESIDUE HEM P1001
26
LC5
SOFTWARE
TYR P:39 , PHE P:57 , GLN P:60 , TYR P:61 , TYR P:64 , GLY P:186 , CYS P:187 , CYS P:190 , HIS P:191 , MET P:196 , LEU P:198 , ARG P:221 , ARG P:225 , MET P:321 , ILE P:332 , SER P:333 , HIS P:335 , TRP P:337 , HEM P:1003 , HOH P:2110 , HOH P:2168 , VAL R:127 , HOH R:2030
BINDING SITE FOR RESIDUE HEM P1002
27
LC6
SOFTWARE
GLY P:78 , SER P:79 , ALA P:118 , ARG P:119 , GLY P:120 , HIS P:121 , TYR P:123 , ALA P:124 , ASP P:127 , CYS P:150 , ILE P:185 , VAL P:228 , CYS P:229 , CYS P:232 , HIS P:233 , HIS P:320 , MET P:321 , TRP P:337 , THR P:338 , HEM P:1001 , HEM P:1002 , HEM P:1004 , CA P:1007 , HOH P:2027
BINDING SITE FOR RESIDUE HEM P1003
28
LC7
SOFTWARE
THR P:74 , LYS P:77 , GLY P:78 , GLU P:117 , HIS P:233 , TYR P:301 , TRP P:304 , HIS P:309 , VAL P:314 , THR P:315 , CYS P:316 , CYS P:319 , HIS P:320 , SER P:339 , MET P:341 , GLN P:369 , ASN P:429 , PHE P:433 , HIS P:434 , HEM P:1003 , HEM P:1005 , CA P:1007 , HOH P:2130 , HOH P:2169
BINDING SITE FOR RESIDUE HEM P1004
29
LC8
SOFTWARE
THR P:308 , HIS P:309 , ALA P:312 , CYS P:319 , ALA P:348 , CYS P:349 , CYS P:352 , HIS P:353 , ARG P:364 , VAL P:365 , PHE P:433 , HEM P:1004 , HOH P:2170 , HOH P:2171 , HOH P:2172 , HOH P:2173 , HIS Q:353 , LYS Q:356 , HEM Q:1005 , HOH Q:2081 , ARG R:141 , MET R:148
BINDING SITE FOR RESIDUE HEM P1005
30
LC9
SOFTWARE
TYR Q:115 , ARG Q:116 , ALA Q:118 , ASP Q:127 , PHE Q:128 , ARG Q:133 , CYS Q:147 , CYS Q:150 , LYS Q:151 , CYS Q:232 , HIS Q:233 , TYR Q:236 , HIS Q:298 , ASN Q:429 , HEM Q:1003 , HOH Q:2029 , HOH Q:2121 , HOH Q:2122 , HOH Q:2123 , HOH Q:2124
BINDING SITE FOR RESIDUE HEM Q1001
31
MC1
SOFTWARE
TYR Q:39 , PHE Q:57 , GLN Q:60 , TYR Q:61 , TYR Q:64 , GLY Q:186 , CYS Q:187 , CYS Q:190 , HIS Q:191 , MET Q:196 , LEU Q:198 , ARG Q:221 , ARG Q:225 , MET Q:321 , TYR Q:323 , ILE Q:332 , SER Q:333 , HIS Q:335 , TRP Q:337 , HEM Q:1003 , HOH Q:2069 , ALA R:157
BINDING SITE FOR RESIDUE HEM Q1002
32
MC2
SOFTWARE
GLY Q:78 , SER Q:79 , ALA Q:118 , ARG Q:119 , GLY Q:120 , HIS Q:121 , TYR Q:123 , ALA Q:124 , ASP Q:127 , CYS Q:150 , LYS Q:151 , ILE Q:185 , THR Q:189 , VAL Q:228 , CYS Q:229 , CYS Q:232 , HIS Q:233 , HIS Q:320 , MET Q:321 , TRP Q:337 , THR Q:338 , HEM Q:1001 , HEM Q:1002 , HEM Q:1004 , CA Q:1007 , HOH Q:2006 , HOH Q:2125
BINDING SITE FOR RESIDUE HEM Q1003
33
MC3
SOFTWARE
THR Q:74 , LYS Q:77 , GLU Q:117 , ALA Q:118 , HIS Q:233 , GLU Q:300 , TRP Q:304 , HIS Q:309 , VAL Q:314 , THR Q:315 , CYS Q:316 , CYS Q:319 , HIS Q:320 , SER Q:339 , PRO Q:340 , MET Q:341 , GLN Q:369 , ASN Q:429 , SER Q:430 , PHE Q:433 , HIS Q:434 , HEM Q:1003 , HEM Q:1005 , CA Q:1007 , HOH Q:2087 , HOH Q:2127
BINDING SITE FOR RESIDUE HEM Q1004
34
MC4
SOFTWARE
HIS P:353 , LYS P:356 , HEM P:1005 , THR Q:308 , HIS Q:309 , VAL Q:314 , ASP Q:318 , CYS Q:319 , PRO Q:340 , ALA Q:348 , CYS Q:349 , CYS Q:352 , HIS Q:353 , ARG Q:364 , VAL Q:365 , PHE Q:433 , PRO Q:436 , HEM Q:1004 , HOH Q:2128 , HOH Q:2129 , HOH Q:2130 , HOH Q:2131 , HOH Q:2132 , ARG R:141 , MET R:148 , LYS R:149
BINDING SITE FOR RESIDUE HEM Q1005
35
MC5
SOFTWARE
THR R:37 , CYS R:43 , CYS R:46 , ILE R:48 , MET R:49 , ASN R:67 , HIS R:70 , ASP R:89 , MET R:92 , ILE R:102 , ALA R:104 , GLY R:105 , THR R:108 , HEM R:1002 , HOH R:2041
BINDING SITE FOR RESIDUE HEM R1001
36
MC6
SOFTWARE
MET R:49 , VAL R:52 , GLY R:53 , HIS R:56 , HIS R:61 , SER R:65 , CYS R:66 , CYS R:69 , HIS R:70 , LYS R:109 , VAL R:112 , THR R:137 , VAL R:143 , GLN R:144 , HIS R:145 , HEM R:1001 , HOH R:2042
BINDING SITE FOR RESIDUE HEM R1002
37
MC7
SOFTWARE
LYS M:329 , CYS O:119 , HIS O:120 , MET O:122 , THR O:123 , ACT O:1006 , GLY R:60 , HIS R:61 , ILE R:64 , ASP R:68 , VAL R:112 , ASN R:115 , CYS R:116 , CYS R:119 , HIS R:120 , HIS R:140 , VAL R:143 , HOH R:2011 , HOH R:2043 , HOH R:2044
BINDING SITE FOR RESIDUE HEM R1003
38
MC8
SOFTWARE
ARG M:325 , HEM O:1004 , ACT O:1006 , TYR P:323 , ARG P:325 , LYS P:331 , ARG P:347 , GLN P:351 , CYS R:116 , HIS R:120 , ASN R:124 , SER R:129 , LYS R:133 , CYS R:136 , CYS R:139 , HIS R:140
BINDING SITE FOR RESIDUE HEM R1004
39
MC9
SOFTWARE
LYS O:35 , GLY P:26 , SER P:28 , ASP P:29 , VAL P:30 , HIS R:73 , ASN R:74 , LEU R:75 , ALA R:118
BINDING SITE FOR RESIDUE LMT R1005
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(1, 12)
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All SCOP Domains
1a: SCOP_d2j7aa_ (A:)
1b: SCOP_d2j7ab_ (B:)
1c: SCOP_d2j7ap_ (P:)
1d: SCOP_d2j7aq_ (Q:)
1e: SCOP_d2j7ad_ (D:)
1f: SCOP_d2j7ae_ (E:)
1g: SCOP_d2j7ag_ (G:)
1h: SCOP_d2j7ah_ (H:)
1i: SCOP_d2j7aj_ (J:)
1j: SCOP_d2j7ak_ (K:)
1k: SCOP_d2j7am_ (M:)
1l: SCOP_d2j7an_ (N:)
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Desulfovibrio vulgaris [TaxId: 882]
(2)
1a
d2j7aa_
A:
1b
d2j7ab_
B:
1c
d2j7ap_
P:
1d
d2j7aq_
Q:
1e
d2j7ad_
D:
1f
d2j7ae_
E:
1g
d2j7ag_
G:
1h
d2j7ah_
H:
1i
d2j7aj_
J:
1j
d2j7ak_
K:
1k
d2j7am_
M:
1l
d2j7an_
N:
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_2j7aC00 (C:14-158)
1b: CATH_2j7aF00 (F:14-158)
1c: CATH_2j7aI00 (I:14-158)
1d: CATH_2j7aL00 (L:14-158)
1e: CATH_2j7aR00 (R:14-158)
1f: CATH_2j7aO00 (O:15-158)
2a: CATH_2j7aA02 (A:355-478)
2b: CATH_2j7aB02 (B:355-478)
2c: CATH_2j7aP02 (P:355-478)
2d: CATH_2j7aQ02 (Q:355-478)
2e: CATH_2j7aD02 (D:355-478)
2f: CATH_2j7aE02 (E:355-478)
2g: CATH_2j7aG02 (G:355-478)
2h: CATH_2j7aH02 (H:355-478)
2i: CATH_2j7aJ02 (J:355-478)
2j: CATH_2j7aK02 (K:355-478)
2k: CATH_2j7aM02 (M:355-478)
2l: CATH_2j7aN02 (N:355-478)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multiheme cytochrome fold
(2)
Homologous Superfamily
:
Di-heme elbow motif domain
(2)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
1a
2j7aC00
C:14-158
1b
2j7aF00
F:14-158
1c
2j7aI00
I:14-158
1d
2j7aL00
L:14-158
1e
2j7aR00
R:14-158
1f
2j7aO00
O:15-158
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
2a
2j7aA02
A:355-478
2b
2j7aB02
B:355-478
2c
2j7aP02
P:355-478
2d
2j7aQ02
Q:355-478
2e
2j7aD02
D:355-478
2f
2j7aE02
E:355-478
2g
2j7aG02
G:355-478
2h
2j7aH02
H:355-478
2i
2j7aJ02
J:355-478
2j
2j7aK02
K:355-478
2k
2j7aM02
M:355-478
2l
2j7aN02
N:355-478
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Pfam Domains
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