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2J7A
Biol. Unit 2
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (424 KB)
Biol.Unit 2 (423 KB)
Biol.Unit 3 (423 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYTOCHROME C NITRITE REDUCTASE NRFHA COMPLEX FROM DESULFOVIBRIO VULGARIS
Authors
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
Date
:
06 Oct 06 (Deposition) - 06 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Quinol Dehydrogenase, Cytochrome C Nitrite Reductase, Nrfa, Nrfh, Napc/Nirt Family, Membrane Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
X-Ray Structure Of The Membrane-Bound Cytochrome C Quinol Dehydrogenase Nrfh Reveals Novel Haem Coordination.
Embo J. V. 25 5951 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
3ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
3ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
3ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
3ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
3af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
3ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
3ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
3ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
3aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
3ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
3al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
3am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
3an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
3ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
3ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
3aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
3ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
3as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
3at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
3au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
3av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
3aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
3ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
3ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
3az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
3bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
3bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
3bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
3be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
3bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
3bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
3bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
3bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
3bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
3bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
3bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
3bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
3bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
3bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
3bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
3bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
3br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
3bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
3bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
3bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
3bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
3bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
3bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
3by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
3bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
3cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
3cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
3cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
3ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
3cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
3i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
3j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
3k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
3l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
3n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
3o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
3r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
3t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
3v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
3w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
3x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
3y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
3z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
4a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4b: DODECYL-BETA-D-MALTOSIDE (LMTb)
4c: DODECYL-BETA-D-MALTOSIDE (LMTc)
4d: DODECYL-BETA-D-MALTOSIDE (LMTd)
4e: DODECYL-BETA-D-MALTOSIDE (LMTe)
4f: DODECYL-BETA-D-MALTOSIDE (LMTf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
28
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
LMT
2
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: GC4 (SOFTWARE)
11: GC5 (SOFTWARE)
12: GC6 (SOFTWARE)
13: GC7 (SOFTWARE)
14: GC8 (SOFTWARE)
15: GC9 (SOFTWARE)
16: HC1 (SOFTWARE)
17: HC2 (SOFTWARE)
18: HC3 (SOFTWARE)
19: HC4 (SOFTWARE)
20: HC5 (SOFTWARE)
21: HC6 (SOFTWARE)
22: HC7 (SOFTWARE)
23: HC8 (SOFTWARE)
24: HC9 (SOFTWARE)
25: IC1 (SOFTWARE)
26: IC2 (SOFTWARE)
27: IC3 (SOFTWARE)
28: IC4 (SOFTWARE)
29: IC5 (SOFTWARE)
30: IC6 (SOFTWARE)
31: IC7 (SOFTWARE)
32: IC8 (SOFTWARE)
33: IC9 (SOFTWARE)
34: JC1 (SOFTWARE)
35: JC2 (SOFTWARE)
36: JC3 (SOFTWARE)
37: JC4 (SOFTWARE)
38: JC5 (SOFTWARE)
39: JC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
GLU G:235 , TYR G:236 , LYS G:295 , GLN G:297 , HOH G:2074 , HOH G:2080
BINDING SITE FOR RESIDUE CA G1006
02
BC2
SOFTWARE
GLY G:78 , GLU G:117 , ALA G:118 , HEM G:1003 , HEM G:1004 , HOH G:2155
BINDING SITE FOR RESIDUE CA G1007
03
BC3
SOFTWARE
GLU H:235 , TYR H:236 , LYS H:295 , GLN H:297 , HOH H:2103 , HOH H:2104
BINDING SITE FOR RESIDUE CA H1006
04
BC4
SOFTWARE
GLY H:78 , GLU H:117 , ALA H:118 , HEM H:1003 , HEM H:1004
BINDING SITE FOR RESIDUE CA H1007
05
BC5
SOFTWARE
HEM I:1003 , HEM I:1004 , HEM L:1003 , HEM L:1004
BINDING SITE FOR RESIDUE ACT I1006
06
BC6
SOFTWARE
GLU J:235 , TYR J:236 , LYS J:295 , GLN J:297 , HOH J:2087 , HOH J:2088
BINDING SITE FOR RESIDUE CA J1006
07
BC7
SOFTWARE
GLY J:78 , GLU J:117 , ALA J:118 , HEM J:1003 , HEM J:1004 , HOH J:2165
BINDING SITE FOR RESIDUE CA J1007
08
BC8
SOFTWARE
GLU K:235 , TYR K:236 , LYS K:295 , GLN K:297 , HOH K:2043 , HOH K:2048
BINDING SITE FOR RESIDUE CA K1006
09
BC9
SOFTWARE
GLY K:78 , GLU K:117 , ALA K:118 , HEM K:1003 , HEM K:1004
BINDING SITE FOR RESIDUE CA K1007
10
GC4
SOFTWARE
TYR G:115 , ARG G:116 , ALA G:118 , PHE G:128 , ILE G:131 , ARG G:133 , CYS G:147 , CYS G:150 , LYS G:151 , CYS G:232 , HIS G:233 , TYR G:236 , HIS G:298 , ASN G:429 , HEM G:1003 , HOH G:2036 , HOH G:2047 , HOH G:2082 , HOH G:2148 , HOH G:2149
BINDING SITE FOR RESIDUE HEM G1001
11
GC5
SOFTWARE
TYR G:39 , PHE G:57 , GLN G:60 , TYR G:64 , GLY G:186 , CYS G:187 , CYS G:190 , HIS G:191 , MET G:196 , LEU G:198 , ARG G:221 , ARG G:225 , MET G:321 , SER G:333 , HIS G:335 , TRP G:337 , HEM G:1003 , HOH G:2091 , HOH G:2150 , HOH G:2151 , GLU I:126 , VAL I:127
BINDING SITE FOR RESIDUE HEM G1002
12
GC6
SOFTWARE
GLY G:78 , SER G:79 , ALA G:118 , ARG G:119 , GLY G:120 , HIS G:121 , TYR G:123 , ALA G:124 , ASP G:127 , CYS G:150 , ILE G:185 , THR G:189 , VAL G:228 , CYS G:229 , CYS G:232 , HIS G:233 , HIS G:320 , TRP G:337 , THR G:338 , HEM G:1001 , HEM G:1002 , HEM G:1004 , CA G:1007 , HOH G:2037 , HOH G:2152
BINDING SITE FOR RESIDUE HEM G1003
13
GC7
SOFTWARE
THR G:74 , LYS G:77 , GLY G:78 , GLU G:117 , HIS G:233 , TRP G:304 , HIS G:309 , VAL G:314 , THR G:315 , CYS G:316 , CYS G:319 , HIS G:320 , SER G:339 , GLN G:369 , ASN G:429 , PHE G:433 , HIS G:434 , HEM G:1003 , HEM G:1005 , CA G:1007 , HOH G:2153 , HOH G:2154 , HOH G:2155
BINDING SITE FOR RESIDUE HEM G1004
14
GC8
SOFTWARE
HIS G:309 , ALA G:348 , CYS G:349 , CYS G:352 , HIS G:353 , ARG G:364 , VAL G:365 , HEM G:1004 , HOH G:2157 , HOH G:2158 , HOH G:2159 , HOH G:2160 , HIS H:353 , LYS H:356 , HEM H:1005 , HOH H:2192 , ARG I:141 , MET I:148
BINDING SITE FOR RESIDUE HEM G1005
15
GC9
SOFTWARE
TYR H:115 , ARG H:116 , ASP H:127 , PHE H:128 , ILE H:131 , ARG H:133 , CYS H:147 , CYS H:150 , LYS H:151 , CYS H:232 , HIS H:233 , TYR H:236 , HIS H:298 , ASN H:429 , HEM H:1003 , HOH H:2031 , HOH H:2049 , HOH H:2184 , HOH H:2185 , HOH H:2186
BINDING SITE FOR RESIDUE HEM H1001
16
HC1
SOFTWARE
TYR H:39 , PHE H:57 , GLN H:60 , TYR H:64 , GLY H:186 , CYS H:187 , CYS H:190 , HIS H:191 , MET H:196 , LEU H:198 , ARG H:221 , ARG H:225 , MET H:321 , ILE H:332 , SER H:333 , HIS H:335 , TRP H:337 , HEM H:1003 , HOH H:2117 , ALA I:157
BINDING SITE FOR RESIDUE HEM H1002
17
HC2
SOFTWARE
GLY H:78 , SER H:79 , ALA H:118 , ARG H:119 , GLY H:120 , HIS H:121 , TYR H:123 , ALA H:124 , ASP H:127 , CYS H:150 , LYS H:151 , ILE H:185 , THR H:189 , VAL H:228 , CYS H:229 , CYS H:232 , HIS H:233 , HIS H:320 , TRP H:337 , THR H:338 , HEM H:1001 , HEM H:1002 , HEM H:1004 , CA H:1007 , HOH H:2187
BINDING SITE FOR RESIDUE HEM H1003
18
HC3
SOFTWARE
THR H:74 , LYS H:77 , GLY H:78 , GLU H:117 , GLU H:300 , TRP H:304 , HIS H:309 , VAL H:314 , THR H:315 , CYS H:316 , CYS H:319 , HIS H:320 , SER H:339 , MET H:341 , GLN H:369 , ASN H:429 , PHE H:433 , HIS H:434 , HEM H:1003 , HEM H:1005 , CA H:1007 , HOH H:2139 , HOH H:2188
BINDING SITE FOR RESIDUE HEM H1004
19
HC4
SOFTWARE
HIS G:353 , LYS G:356 , HEM G:1005 , HIS H:309 , VAL H:314 , ASP H:318 , CYS H:319 , PRO H:340 , ALA H:348 , CYS H:349 , CYS H:352 , HIS H:353 , ARG H:364 , VAL H:365 , PRO H:436 , HEM H:1004 , HOH H:2189 , HOH H:2190 , HOH H:2191 , HOH H:2192 , HOH H:2193 , HOH H:2194 , MET I:148 , LYS I:149
BINDING SITE FOR RESIDUE HEM H1005
20
HC5
SOFTWARE
THR I:37 , CYS I:43 , CYS I:46 , MET I:49 , ASN I:67 , HIS I:70 , ASP I:89 , ASN I:93 , ALA I:104 , GLY I:105 , THR I:108 , HEM I:1002
BINDING SITE FOR RESIDUE HEM I1001
21
HC6
SOFTWARE
CYS I:43 , MET I:49 , VAL I:52 , HIS I:56 , HIS I:61 , SER I:65 , CYS I:66 , CYS I:69 , HIS I:70 , ILE I:102 , ALA I:104 , LYS I:109 , VAL I:112 , THR I:137 , GLN I:144 , HIS I:145 , HEM I:1001 , HOH I:2037 , HOH I:2038
BINDING SITE FOR RESIDUE HEM I1002
22
HC7
SOFTWARE
GLY I:60 , HIS I:61 , ASP I:68 , VAL I:112 , ASN I:115 , CYS I:116 , CYS I:119 , HIS I:120 , HIS I:140 , VAL I:143 , HEM I:1004 , ACT I:1006 , HOH I:2039 , HOH I:2040 , LYS J:329 , CYS L:119 , HIS L:120 , MET L:122 , THR L:123
BINDING SITE FOR RESIDUE HEM I1003
23
HC8
SOFTWARE
ASP G:318 , TYR G:323 , THR G:324 , ARG G:325 , LYS G:331 , GLN G:351 , CYS I:116 , HIS I:120 , ASN I:124 , SER I:129 , CYS I:136 , CYS I:139 , HIS I:140 , HEM I:1003 , ACT I:1006 , ARG J:325 , LYS J:329 , HEM L:1004
BINDING SITE FOR RESIDUE HEM I1004
24
HC9
SOFTWARE
GLY G:26 , SER G:28 , ASP G:29 , VAL G:30 , HIS I:73 , ASN I:74 , LEU I:75 , ALA I:118
BINDING SITE FOR RESIDUE LMT I1005
25
IC1
SOFTWARE
TYR J:115 , ARG J:116 , PHE J:128 , ILE J:131 , ARG J:133 , CYS J:147 , CYS J:150 , LYS J:151 , CYS J:232 , HIS J:233 , TYR J:236 , HIS J:298 , ASN J:429 , HEM J:1003 , HOH J:2034 , HOH J:2157 , HOH J:2158 , HOH J:2159 , HOH J:2160
BINDING SITE FOR RESIDUE HEM J1001
26
IC2
SOFTWARE
TYR J:39 , PHE J:57 , GLN J:60 , TYR J:61 , TYR J:64 , GLY J:186 , CYS J:187 , CYS J:190 , HIS J:191 , MET J:196 , LEU J:198 , ARG J:221 , ARG J:225 , MET J:321 , ILE J:332 , SER J:333 , HIS J:335 , TRP J:337 , HEM J:1003 , HOH J:2100 , HOH J:2161 , HOH J:2162 , GLU L:126 , VAL L:127 , HOH L:2029
BINDING SITE FOR RESIDUE HEM J1002
27
IC3
SOFTWARE
GLY J:78 , SER J:79 , ALA J:118 , ARG J:119 , GLY J:120 , HIS J:121 , TYR J:123 , ALA J:124 , ASP J:127 , CYS J:150 , ILE J:185 , THR J:189 , VAL J:228 , CYS J:229 , CYS J:232 , HIS J:233 , HIS J:320 , MET J:321 , TRP J:337 , THR J:338 , HEM J:1001 , HEM J:1002 , HEM J:1004 , CA J:1007 , HOH J:2036 , HOH J:2163
BINDING SITE FOR RESIDUE HEM J1003
28
IC4
SOFTWARE
THR J:74 , LYS J:77 , GLY J:78 , GLU J:117 , CYS J:229 , HIS J:233 , TYR J:301 , TRP J:304 , HIS J:309 , VAL J:314 , THR J:315 , CYS J:316 , CYS J:319 , HIS J:320 , SER J:339 , MET J:341 , GLN J:369 , ASN J:429 , PHE J:433 , HIS J:434 , HEM J:1003 , HEM J:1005 , CA J:1007 , HOH J:2118 , HOH J:2164 , HOH J:2165
BINDING SITE FOR RESIDUE HEM J1004
29
IC5
SOFTWARE
THR J:308 , HIS J:309 , ALA J:312 , CYS J:319 , ALA J:348 , CYS J:349 , CYS J:352 , HIS J:353 , ARG J:364 , VAL J:365 , HEM J:1004 , HOH J:2166 , HOH J:2167 , HOH J:2168 , HIS K:353 , LYS K:356 , HEM K:1005 , ARG L:141 , MET L:148
BINDING SITE FOR RESIDUE HEM J1005
30
IC6
SOFTWARE
TYR K:115 , ARG K:116 , ALA K:118 , PHE K:128 , ILE K:131 , ARG K:133 , CYS K:147 , CYS K:150 , LYS K:151 , CYS K:232 , HIS K:233 , TYR K:236 , HIS K:298 , ASN K:429 , HEM K:1003 , HOH K:2021 , HOH K:2098
BINDING SITE FOR RESIDUE HEM K1001
31
IC7
SOFTWARE
TYR K:39 , PHE K:57 , GLN K:60 , TYR K:64 , GLY K:186 , CYS K:187 , CYS K:190 , HIS K:191 , MET K:196 , LEU K:198 , ARG K:221 , ARG K:225 , VAL K:228 , MET K:321 , TYR K:323 , ILE K:332 , SER K:333 , HIS K:335 , TRP K:337 , HEM K:1003 , HOH K:2099 , ALA L:157
BINDING SITE FOR RESIDUE HEM K1002
32
IC8
SOFTWARE
GLY K:78 , SER K:79 , ALA K:118 , ARG K:119 , GLY K:120 , HIS K:121 , TYR K:123 , ALA K:124 , ASP K:127 , CYS K:150 , LYS K:151 , ILE K:185 , THR K:189 , VAL K:228 , CYS K:229 , CYS K:232 , HIS K:233 , HIS K:320 , MET K:321 , TRP K:337 , THR K:338 , HEM K:1001 , HEM K:1002 , HEM K:1004 , CA K:1007 , HOH K:2100 , HOH K:2101
BINDING SITE FOR RESIDUE HEM K1003
33
IC9
SOFTWARE
THR K:74 , LYS K:77 , GLY K:78 , GLU K:117 , CYS K:229 , HIS K:233 , TRP K:304 , HIS K:309 , VAL K:314 , THR K:315 , CYS K:316 , CYS K:319 , HIS K:320 , SER K:339 , MET K:341 , GLN K:369 , ASN K:429 , PHE K:433 , HIS K:434 , HEM K:1003 , HEM K:1005 , CA K:1007 , HOH K:2068 , HOH K:2102
BINDING SITE FOR RESIDUE HEM K1004
34
JC1
SOFTWARE
HIS J:353 , LYS J:356 , HEM J:1005 , HOH J:2112 , HIS K:309 , VAL K:314 , ASP K:318 , CYS K:319 , PRO K:340 , ALA K:348 , CYS K:349 , CYS K:352 , HIS K:353 , ARG K:364 , VAL K:365 , PRO K:436 , HEM K:1004 , HOH K:2103 , HOH K:2104 , HOH K:2105 , HOH K:2106 , MET L:148 , LYS L:149
BINDING SITE FOR RESIDUE HEM K1005
35
JC2
SOFTWARE
ARG L:40 , CYS L:43 , MET L:49 , VAL L:52 , HIS L:56 , HIS L:61 , CYS L:66 , CYS L:69 , HIS L:70 , ILE L:102 , ALA L:104 , LYS L:109 , VAL L:112 , THR L:137 , VAL L:143 , GLN L:144 , HIS L:145 , HEM L:1101 , HOH L:2012 , HOH L:2040
BINDING SITE FOR RESIDUE HEM L1002
36
JC3
SOFTWARE
LYS G:329 , CYS I:119 , HIS I:120 , MET I:122 , THR I:123 , ACT I:1006 , GLY L:60 , HIS L:61 , ILE L:64 , ASP L:68 , CYS L:69 , VAL L:112 , ASN L:115 , CYS L:116 , CYS L:119 , HIS L:120 , HIS L:140 , VAL L:143 , HEM L:1004 , HOH L:2041 , HOH L:2042 , HOH L:2043
BINDING SITE FOR RESIDUE HEM L1003
37
JC4
SOFTWARE
ARG G:325 , LYS G:329 , HEM I:1004 , ACT I:1006 , TYR J:323 , THR J:324 , ARG J:325 , LYS J:331 , ARG J:347 , GLN J:351 , CYS L:116 , HIS L:120 , ASN L:124 , SER L:129 , LYS L:133 , CYS L:136 , CYS L:139 , HIS L:140 , HEM L:1003
BINDING SITE FOR RESIDUE HEM L1004
38
JC5
SOFTWARE
LYS I:35 , GLY J:26 , SER J:28 , ASP J:29 , VAL J:30 , HIS L:73 , ASN L:74 , LEU L:75 , LEU L:76
BINDING SITE FOR RESIDUE LMT L1005
39
JC6
SOFTWARE
THR L:37 , CYS L:43 , CYS L:46 , MET L:49 , ASN L:67 , HIS L:70 , ASP L:89 , PRO L:98 , ALA L:104 , GLY L:105 , THR L:108 , HEM L:1002
BINDING SITE FOR RESIDUE HEM L1101
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 12)
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All SCOP Domains
1a: SCOP_d2j7aa_ (A:)
1b: SCOP_d2j7ab_ (B:)
1c: SCOP_d2j7ap_ (P:)
1d: SCOP_d2j7aq_ (Q:)
1e: SCOP_d2j7ad_ (D:)
1f: SCOP_d2j7ae_ (E:)
1g: SCOP_d2j7ag_ (G:)
1h: SCOP_d2j7ah_ (H:)
1i: SCOP_d2j7aj_ (J:)
1j: SCOP_d2j7ak_ (K:)
1k: SCOP_d2j7am_ (M:)
1l: SCOP_d2j7an_ (N:)
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Desulfovibrio vulgaris [TaxId: 882]
(2)
1a
d2j7aa_
A:
1b
d2j7ab_
B:
1c
d2j7ap_
P:
1d
d2j7aq_
Q:
1e
d2j7ad_
D:
1f
d2j7ae_
E:
1g
d2j7ag_
G:
1h
d2j7ah_
H:
1i
d2j7aj_
J:
1j
d2j7ak_
K:
1k
d2j7am_
M:
1l
d2j7an_
N:
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_2j7aC00 (C:14-158)
1b: CATH_2j7aF00 (F:14-158)
1c: CATH_2j7aI00 (I:14-158)
1d: CATH_2j7aL00 (L:14-158)
1e: CATH_2j7aR00 (R:14-158)
1f: CATH_2j7aO00 (O:15-158)
2a: CATH_2j7aA02 (A:355-478)
2b: CATH_2j7aB02 (B:355-478)
2c: CATH_2j7aP02 (P:355-478)
2d: CATH_2j7aQ02 (Q:355-478)
2e: CATH_2j7aD02 (D:355-478)
2f: CATH_2j7aE02 (E:355-478)
2g: CATH_2j7aG02 (G:355-478)
2h: CATH_2j7aH02 (H:355-478)
2i: CATH_2j7aJ02 (J:355-478)
2j: CATH_2j7aK02 (K:355-478)
2k: CATH_2j7aM02 (M:355-478)
2l: CATH_2j7aN02 (N:355-478)
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multiheme cytochrome fold
(2)
Homologous Superfamily
:
Di-heme elbow motif domain
(2)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
1a
2j7aC00
C:14-158
1b
2j7aF00
F:14-158
1c
2j7aI00
I:14-158
1d
2j7aL00
L:14-158
1e
2j7aR00
R:14-158
1f
2j7aO00
O:15-158
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
2a
2j7aA02
A:355-478
2b
2j7aB02
B:355-478
2c
2j7aP02
P:355-478
2d
2j7aQ02
Q:355-478
2e
2j7aD02
D:355-478
2f
2j7aE02
E:355-478
2g
2j7aG02
G:355-478
2h
2j7aH02
H:355-478
2i
2j7aJ02
J:355-478
2j
2j7aK02
K:355-478
2k
2j7aM02
M:355-478
2l
2j7aN02
N:355-478
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Pfam Domains
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Asymmetric Unit 1
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