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2J7A
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (424 KB)
Biol.Unit 2 (423 KB)
Biol.Unit 3 (423 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYTOCHROME C NITRITE REDUCTASE NRFHA COMPLEX FROM DESULFOVIBRIO VULGARIS
Authors
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
Date
:
06 Oct 06 (Deposition) - 06 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Quinol Dehydrogenase, Cytochrome C Nitrite Reductase, Nrfa, Nrfh, Napc/Nirt Family, Membrane Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Rodrigues, T. F. Oliveira, I. A. C. Pereira, M. Archer
X-Ray Structure Of The Membrane-Bound Cytochrome C Quinol Dehydrogenase Nrfh Reveals Novel Haem Coordination.
Embo J. V. 25 5951 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3aa: PROTOPORPHYRIN IX CONTAINING FE (HEMaa)
3ab: PROTOPORPHYRIN IX CONTAINING FE (HEMab)
3ac: PROTOPORPHYRIN IX CONTAINING FE (HEMac)
3ad: PROTOPORPHYRIN IX CONTAINING FE (HEMad)
3ae: PROTOPORPHYRIN IX CONTAINING FE (HEMae)
3af: PROTOPORPHYRIN IX CONTAINING FE (HEMaf)
3ag: PROTOPORPHYRIN IX CONTAINING FE (HEMag)
3ah: PROTOPORPHYRIN IX CONTAINING FE (HEMah)
3ai: PROTOPORPHYRIN IX CONTAINING FE (HEMai)
3aj: PROTOPORPHYRIN IX CONTAINING FE (HEMaj)
3ak: PROTOPORPHYRIN IX CONTAINING FE (HEMak)
3al: PROTOPORPHYRIN IX CONTAINING FE (HEMal)
3am: PROTOPORPHYRIN IX CONTAINING FE (HEMam)
3an: PROTOPORPHYRIN IX CONTAINING FE (HEMan)
3ao: PROTOPORPHYRIN IX CONTAINING FE (HEMao)
3ap: PROTOPORPHYRIN IX CONTAINING FE (HEMap)
3aq: PROTOPORPHYRIN IX CONTAINING FE (HEMaq)
3ar: PROTOPORPHYRIN IX CONTAINING FE (HEMar)
3as: PROTOPORPHYRIN IX CONTAINING FE (HEMas)
3at: PROTOPORPHYRIN IX CONTAINING FE (HEMat)
3au: PROTOPORPHYRIN IX CONTAINING FE (HEMau)
3av: PROTOPORPHYRIN IX CONTAINING FE (HEMav)
3aw: PROTOPORPHYRIN IX CONTAINING FE (HEMaw)
3ax: PROTOPORPHYRIN IX CONTAINING FE (HEMax)
3ay: PROTOPORPHYRIN IX CONTAINING FE (HEMay)
3az: PROTOPORPHYRIN IX CONTAINING FE (HEMaz)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3ba: PROTOPORPHYRIN IX CONTAINING FE (HEMba)
3bb: PROTOPORPHYRIN IX CONTAINING FE (HEMbb)
3bc: PROTOPORPHYRIN IX CONTAINING FE (HEMbc)
3bd: PROTOPORPHYRIN IX CONTAINING FE (HEMbd)
3be: PROTOPORPHYRIN IX CONTAINING FE (HEMbe)
3bf: PROTOPORPHYRIN IX CONTAINING FE (HEMbf)
3bg: PROTOPORPHYRIN IX CONTAINING FE (HEMbg)
3bh: PROTOPORPHYRIN IX CONTAINING FE (HEMbh)
3bi: PROTOPORPHYRIN IX CONTAINING FE (HEMbi)
3bj: PROTOPORPHYRIN IX CONTAINING FE (HEMbj)
3bk: PROTOPORPHYRIN IX CONTAINING FE (HEMbk)
3bl: PROTOPORPHYRIN IX CONTAINING FE (HEMbl)
3bm: PROTOPORPHYRIN IX CONTAINING FE (HEMbm)
3bn: PROTOPORPHYRIN IX CONTAINING FE (HEMbn)
3bo: PROTOPORPHYRIN IX CONTAINING FE (HEMbo)
3bp: PROTOPORPHYRIN IX CONTAINING FE (HEMbp)
3bq: PROTOPORPHYRIN IX CONTAINING FE (HEMbq)
3br: PROTOPORPHYRIN IX CONTAINING FE (HEMbr)
3bs: PROTOPORPHYRIN IX CONTAINING FE (HEMbs)
3bt: PROTOPORPHYRIN IX CONTAINING FE (HEMbt)
3bu: PROTOPORPHYRIN IX CONTAINING FE (HEMbu)
3bv: PROTOPORPHYRIN IX CONTAINING FE (HEMbv)
3bw: PROTOPORPHYRIN IX CONTAINING FE (HEMbw)
3bx: PROTOPORPHYRIN IX CONTAINING FE (HEMbx)
3by: PROTOPORPHYRIN IX CONTAINING FE (HEMby)
3bz: PROTOPORPHYRIN IX CONTAINING FE (HEMbz)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3ca: PROTOPORPHYRIN IX CONTAINING FE (HEMca)
3cb: PROTOPORPHYRIN IX CONTAINING FE (HEMcb)
3cc: PROTOPORPHYRIN IX CONTAINING FE (HEMcc)
3cd: PROTOPORPHYRIN IX CONTAINING FE (HEMcd)
3ce: PROTOPORPHYRIN IX CONTAINING FE (HEMce)
3cf: PROTOPORPHYRIN IX CONTAINING FE (HEMcf)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
3i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
3j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
3k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
3l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
3n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
3o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
3r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
3t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
3v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
3w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
3x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
3y: PROTOPORPHYRIN IX CONTAINING FE (HEMy)
3z: PROTOPORPHYRIN IX CONTAINING FE (HEMz)
4a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4b: DODECYL-BETA-D-MALTOSIDE (LMTb)
4c: DODECYL-BETA-D-MALTOSIDE (LMTc)
4d: DODECYL-BETA-D-MALTOSIDE (LMTd)
4e: DODECYL-BETA-D-MALTOSIDE (LMTe)
4f: DODECYL-BETA-D-MALTOSIDE (LMTf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
28
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
LMT
2
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC2 (SOFTWARE)
21: EC3 (SOFTWARE)
22: EC4 (SOFTWARE)
23: EC5 (SOFTWARE)
24: EC6 (SOFTWARE)
25: EC7 (SOFTWARE)
26: EC8 (SOFTWARE)
27: EC9 (SOFTWARE)
28: FC1 (SOFTWARE)
29: FC2 (SOFTWARE)
30: FC3 (SOFTWARE)
31: FC4 (SOFTWARE)
32: FC5 (SOFTWARE)
33: FC6 (SOFTWARE)
34: FC7 (SOFTWARE)
35: FC8 (SOFTWARE)
36: FC9 (SOFTWARE)
37: GC1 (SOFTWARE)
38: GC2 (SOFTWARE)
39: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:235 , TYR A:236 , LYS A:295 , GLN A:297 , HOH A:2098 , HOH A:2101
BINDING SITE FOR RESIDUE CA A1006
02
AC2
SOFTWARE
GLY A:78 , GLU A:117 , ALA A:118 , HEM A:1003 , HEM A:1004 , HOH A:2195
BINDING SITE FOR RESIDUE CA A1007
03
AC3
SOFTWARE
GLU B:235 , TYR B:236 , LYS B:295 , GLN B:297 , HOH B:2101 , HOH B:2105
BINDING SITE FOR RESIDUE CA B1006
04
AC4
SOFTWARE
GLY B:78 , GLU B:117 , ALA B:118 , HEM B:1003 , HEM B:1004
BINDING SITE FOR RESIDUE CA B1007
05
AC5
SOFTWARE
HOH A:2118 , HIS C:120 , HEM C:1003 , HEM F:1003 , HEM F:1004
BINDING SITE FOR RESIDUE ACT C1006
06
AC6
SOFTWARE
GLU D:235 , TYR D:236 , LYS D:295 , GLN D:297 , HOH D:2092 , HOH D:2095
BINDING SITE FOR RESIDUE CA D1006
07
AC7
SOFTWARE
GLY D:78 , GLU D:117 , ALA D:118 , HEM D:1003 , HEM D:1004
BINDING SITE FOR RESIDUE CA D1007
08
AC8
SOFTWARE
GLU E:235 , TYR E:236 , LYS E:295 , GLN E:297 , HOH E:2085
BINDING SITE FOR RESIDUE CA E1006
09
AC9
SOFTWARE
GLY E:78 , GLU E:117 , ALA E:118 , HEM E:1003 , HEM E:1004
BINDING SITE FOR RESIDUE CA E1007
10
DC1
SOFTWARE
TYR A:115 , ARG A:116 , ALA A:118 , PHE A:128 , ILE A:131 , ARG A:133 , CYS A:147 , CYS A:150 , LYS A:151 , CYS A:232 , HIS A:233 , TYR A:236 , HIS A:298 , ASN A:429 , HEM A:1003 , HOH A:2032 , HOH A:2034 , HOH A:2103 , HOH A:2187 , HOH A:2188
BINDING SITE FOR RESIDUE HEM A1001
11
DC2
SOFTWARE
TYR A:39 , PHE A:57 , GLN A:60 , TYR A:64 , GLY A:186 , CYS A:187 , CYS A:190 , HIS A:191 , MET A:196 , LEU A:198 , ARG A:221 , ARG A:225 , MET A:321 , ILE A:332 , SER A:333 , HIS A:335 , TRP A:337 , HEM A:1003 , HOH A:2117 , HOH A:2189 , HOH A:2190 , HOH A:2191 , VAL C:127
BINDING SITE FOR RESIDUE HEM A1002
12
DC3
SOFTWARE
GLY A:78 , SER A:79 , ALA A:118 , ARG A:119 , GLY A:120 , HIS A:121 , TYR A:123 , ALA A:124 , ASP A:127 , CYS A:150 , ILE A:185 , THR A:189 , VAL A:228 , CYS A:229 , CYS A:232 , HIS A:233 , HIS A:320 , TRP A:337 , THR A:338 , HEM A:1001 , HEM A:1002 , HEM A:1004 , CA A:1007 , HOH A:2192 , HOH A:2193
BINDING SITE FOR RESIDUE HEM A1003
13
DC4
SOFTWARE
THR A:74 , LYS A:77 , GLY A:78 , GLU A:117 , HIS A:233 , TRP A:304 , HIS A:309 , VAL A:314 , THR A:315 , CYS A:316 , CYS A:319 , HIS A:320 , SER A:339 , PRO A:340 , MET A:341 , GLN A:369 , ASN A:429 , PHE A:433 , HIS A:434 , HEM A:1003 , CA A:1007 , HOH A:2194 , HOH A:2195 , HOH A:2196
BINDING SITE FOR RESIDUE HEM A1004
14
DC5
SOFTWARE
HIS A:309 , VAL A:314 , PRO A:340 , ALA A:348 , CYS A:349 , CYS A:352 , HIS A:353 , ARG A:364 , VAL A:365 , HOH A:2197 , HOH A:2198 , HOH A:2199 , HOH A:2200 , HOH A:2201 , HIS B:353 , LYS B:356 , HEM B:1005 , HOH B:2183 , ARG C:141 , MET C:148
BINDING SITE FOR RESIDUE HEM A1005
15
DC6
SOFTWARE
TYR B:115 , ARG B:116 , ALA B:118 , PHE B:128 , ILE B:131 , ARG B:133 , CYS B:147 , CYS B:150 , LYS B:151 , CYS B:232 , HIS B:233 , TYR B:236 , HIS B:298 , ASN B:429 , HEM B:1003 , HOH B:2031 , HOH B:2046 , HOH B:2176 , HOH B:2177 , HOH B:2178 , HOH B:2179
BINDING SITE FOR RESIDUE HEM B1001
16
DC7
SOFTWARE
TYR B:39 , PHE B:57 , GLN B:60 , TYR B:64 , GLY B:186 , CYS B:187 , CYS B:190 , HIS B:191 , MET B:196 , ARG B:221 , ARG B:225 , MET B:321 , TYR B:323 , ILE B:332 , SER B:333 , HIS B:335 , TRP B:337 , HEM B:1003 , HOH B:2118 , HOH B:2180 , ALA C:157
BINDING SITE FOR RESIDUE HEM B1002
17
DC8
SOFTWARE
GLY B:78 , SER B:79 , ALA B:118 , ARG B:119 , HIS B:121 , TYR B:123 , ALA B:124 , ASP B:127 , CYS B:150 , LYS B:151 , ILE B:185 , THR B:189 , VAL B:228 , CYS B:229 , CYS B:232 , HIS B:233 , HIS B:320 , TRP B:337 , THR B:338 , HEM B:1001 , HEM B:1002 , HEM B:1004 , CA B:1007 , HOH B:2181 , HOH B:2182
BINDING SITE FOR RESIDUE HEM B1003
18
DC9
SOFTWARE
THR B:74 , LYS B:77 , GLY B:78 , GLU B:117 , HIS B:233 , TRP B:304 , HIS B:309 , VAL B:314 , THR B:315 , CYS B:316 , CYS B:319 , HIS B:320 , SER B:339 , PRO B:340 , MET B:341 , GLN B:369 , ASN B:429 , PHE B:433 , HIS B:434 , HEM B:1003 , CA B:1007 , HOH B:2137 , HOH B:2182
BINDING SITE FOR RESIDUE HEM B1004
19
EC1
SOFTWARE
THR A:308 , HIS A:353 , LYS A:356 , HEM A:1005 , HIS B:309 , VAL B:314 , ASP B:318 , CYS B:319 , PRO B:340 , ALA B:348 , CYS B:349 , CYS B:352 , HIS B:353 , ARG B:364 , VAL B:365 , HOH B:2183 , HOH B:2184 , HOH B:2185 , HOH B:2186 , HOH B:2187 , HOH B:2188 , MET C:148 , LYS C:149
BINDING SITE FOR RESIDUE HEM B1005
20
EC2
SOFTWARE
THR C:37 , CYS C:43 , CYS C:46 , ILE C:48 , MET C:49 , ASN C:67 , HIS C:70 , ASP C:89 , MET C:92 , ASN C:93 , LEU C:103 , ALA C:104 , GLY C:105 , THR C:108 , HEM C:1002
BINDING SITE FOR RESIDUE HEM C1001
21
EC3
SOFTWARE
ARG C:40 , CYS C:43 , MET C:49 , VAL C:52 , HIS C:56 , HIS C:61 , SER C:65 , CYS C:66 , CYS C:69 , HIS C:70 , ILE C:102 , LYS C:109 , VAL C:112 , THR C:137 , GLN C:144 , HIS C:145 , HEM C:1001 , HOH C:2022 , HOH C:2047
BINDING SITE FOR RESIDUE HEM C1002
22
EC4
SOFTWARE
GLY C:60 , HIS C:61 , ASP C:68 , VAL C:112 , ASN C:115 , CYS C:116 , CYS C:119 , HIS C:120 , HIS C:140 , VAL C:143 , HEM C:1004 , ACT C:1006 , HOH C:2012 , HOH C:2048 , HOH C:2049 , LYS D:329 , CYS F:119 , HIS F:120 , MET F:122 , THR F:123
BINDING SITE FOR RESIDUE HEM C1003
23
EC5
SOFTWARE
TYR A:323 , ARG A:325 , LYS A:331 , GLN A:351 , HOH A:2119 , CYS C:116 , HIS C:120 , ASN C:124 , SER C:129 , LYS C:133 , CYS C:136 , CYS C:139 , HIS C:140 , HEM C:1003 , ARG D:325 , LYS D:329 , HEM F:1004
BINDING SITE FOR RESIDUE HEM C1004
24
EC6
SOFTWARE
GLY A:26 , SER A:28 , ASP A:29 , VAL A:30 , HIS C:73 , ASN C:74 , LEU C:75 , ALA C:118 , HOH C:2050
BINDING SITE FOR RESIDUE LMT C1005
25
EC7
SOFTWARE
TYR D:115 , ARG D:116 , ALA D:118 , PHE D:128 , ILE D:131 , ARG D:133 , CYS D:147 , CYS D:150 , LYS D:151 , CYS D:232 , HIS D:233 , TYR D:236 , PHE D:238 , HIS D:298 , ASN D:429 , HEM D:1003 , HOH D:2038 , HOH D:2158 , HOH D:2159 , HOH D:2160
BINDING SITE FOR RESIDUE HEM D1001
26
EC8
SOFTWARE
TYR D:39 , PHE D:57 , GLN D:60 , TYR D:61 , TYR D:64 , GLY D:186 , CYS D:187 , CYS D:190 , HIS D:191 , MET D:196 , LEU D:198 , ARG D:221 , ARG D:225 , MET D:321 , ILE D:332 , SER D:333 , HIS D:335 , TRP D:337 , HEM D:1003 , HOH D:2108 , HOH D:2161 , HOH D:2162 , GLU F:126 , VAL F:127
BINDING SITE FOR RESIDUE HEM D1002
27
EC9
SOFTWARE
GLY D:78 , SER D:79 , ALA D:118 , ARG D:119 , GLY D:120 , HIS D:121 , TYR D:123 , ALA D:124 , ASP D:127 , CYS D:150 , ILE D:185 , VAL D:228 , CYS D:229 , CYS D:232 , HIS D:233 , HIS D:320 , MET D:321 , TRP D:337 , THR D:338 , HEM D:1001 , HEM D:1002 , HEM D:1004 , CA D:1007 , HOH D:2039 , HOH D:2163
BINDING SITE FOR RESIDUE HEM D1003
28
FC1
SOFTWARE
THR D:74 , LYS D:77 , GLY D:78 , GLU D:117 , CYS D:229 , HIS D:233 , TRP D:304 , HIS D:309 , VAL D:314 , THR D:315 , CYS D:316 , CYS D:319 , HIS D:320 , SER D:339 , MET D:341 , GLN D:369 , ASN D:429 , PHE D:433 , HIS D:434 , HEM D:1003 , CA D:1007 , HOH D:2164 , HOH D:2165
BINDING SITE FOR RESIDUE HEM D1004
29
FC2
SOFTWARE
HIS D:309 , VAL D:314 , ALA D:348 , CYS D:349 , CYS D:352 , HIS D:353 , ARG D:364 , VAL D:365 , HOH D:2125 , HOH D:2166 , HOH D:2167 , HOH D:2168 , HOH D:2169 , HOH D:2170 , HIS E:353 , LYS E:356 , ARG F:141
BINDING SITE FOR RESIDUE HEM D1005
30
FC3
SOFTWARE
TYR E:115 , ARG E:116 , ALA E:118 , PHE E:128 , ILE E:131 , ARG E:133 , CYS E:147 , CYS E:150 , LYS E:151 , CYS E:232 , HIS E:233 , TYR E:236 , HIS E:298 , ASN E:429 , HEM E:1003 , HOH E:2045 , HOH E:2049 , HOH E:2070 , HOH E:2149 , HOH E:2150 , HOH E:2151
BINDING SITE FOR RESIDUE HEM E1001
31
FC4
SOFTWARE
TYR E:39 , PHE E:57 , GLN E:60 , TYR E:61 , TYR E:64 , GLY E:186 , CYS E:187 , CYS E:190 , HIS E:191 , MET E:196 , LEU E:198 , ARG E:221 , ARG E:225 , MET E:321 , TYR E:323 , ILE E:332 , SER E:333 , HIS E:335 , TRP E:337 , HEM E:1003 , HOH E:2099 , ALA F:157
BINDING SITE FOR RESIDUE HEM E1002
32
FC5
SOFTWARE
GLY E:78 , SER E:79 , ALA E:118 , ARG E:119 , GLY E:120 , HIS E:121 , TYR E:123 , ALA E:124 , ASP E:127 , CYS E:150 , LYS E:151 , ILE E:185 , THR E:189 , VAL E:228 , CYS E:229 , CYS E:232 , HIS E:233 , HIS E:320 , MET E:321 , TRP E:337 , THR E:338 , HEM E:1001 , HEM E:1002 , HEM E:1004 , CA E:1007 , HOH E:2039 , HOH E:2152
BINDING SITE FOR RESIDUE HEM E1003
33
FC6
SOFTWARE
THR E:74 , LYS E:77 , GLY E:78 , GLU E:117 , HIS E:233 , TRP E:304 , HIS E:309 , VAL E:314 , THR E:315 , CYS E:316 , CYS E:319 , HIS E:320 , SER E:339 , MET E:341 , GLN E:369 , ASN E:429 , PHE E:433 , HIS E:434 , HEM E:1003 , HEM E:1005 , CA E:1007 , HOH E:2153
BINDING SITE FOR RESIDUE HEM E1004
34
FC7
SOFTWARE
HIS D:353 , LYS D:356 , HOH D:2167 , THR E:308 , HIS E:309 , VAL E:314 , ASP E:318 , CYS E:319 , ALA E:348 , CYS E:349 , CYS E:352 , HIS E:353 , ARG E:364 , VAL E:365 , HEM E:1004 , HOH E:2154 , HOH E:2155 , MET F:148 , LYS F:149
BINDING SITE FOR RESIDUE HEM E1005
35
FC8
SOFTWARE
THR F:37 , CYS F:43 , CYS F:46 , ILE F:48 , MET F:49 , ASN F:67 , HIS F:70 , ASP F:89 , MET F:92 , PRO F:98 , ALA F:104 , GLY F:105 , THR F:108 , HEM F:1002
BINDING SITE FOR RESIDUE HEM F1001
36
FC9
SOFTWARE
ARG F:40 , MET F:49 , VAL F:52 , HIS F:56 , HIS F:61 , SER F:65 , CYS F:66 , CYS F:69 , HIS F:70 , LYS F:109 , VAL F:112 , THR F:137 , VAL F:143 , GLN F:144 , HIS F:145 , HEM F:1001 , HOH F:2035 , HOH F:2039
BINDING SITE FOR RESIDUE HEM F1002
37
GC1
SOFTWARE
LYS A:329 , CYS C:119 , HIS C:120 , MET C:122 , THR C:123 , ACT C:1006 , GLY F:60 , HIS F:61 , ASP F:68 , VAL F:112 , ASN F:115 , CYS F:116 , CYS F:119 , HIS F:120 , HIS F:140 , VAL F:143 , HOH F:2040 , HOH F:2041 , HOH F:2042
BINDING SITE FOR RESIDUE HEM F1003
38
GC2
SOFTWARE
ARG A:325 , HEM C:1004 , ACT C:1006 , ASP D:318 , TYR D:323 , THR D:324 , ARG D:325 , LYS D:331 , GLN D:351 , CYS F:116 , HIS F:120 , ASN F:124 , SER F:129 , CYS F:136 , CYS F:139 , HIS F:140
BINDING SITE FOR RESIDUE HEM F1004
39
GC3
SOFTWARE
LYS C:35 , GLY D:26 , SER D:28 , ASP D:29 , VAL D:30 , HIS F:73 , ASN F:74 , LEU F:75 , ALA F:118
BINDING SITE FOR RESIDUE LMT F1005
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(1, 12)
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All SCOP Domains
1a: SCOP_d2j7aa_ (A:)
1b: SCOP_d2j7ab_ (B:)
1c: SCOP_d2j7ap_ (P:)
1d: SCOP_d2j7aq_ (Q:)
1e: SCOP_d2j7ad_ (D:)
1f: SCOP_d2j7ae_ (E:)
1g: SCOP_d2j7ag_ (G:)
1h: SCOP_d2j7ah_ (H:)
1i: SCOP_d2j7aj_ (J:)
1j: SCOP_d2j7ak_ (K:)
1k: SCOP_d2j7am_ (M:)
1l: SCOP_d2j7an_ (N:)
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Desulfovibrio vulgaris [TaxId: 882]
(2)
1a
d2j7aa_
A:
1b
d2j7ab_
B:
1c
d2j7ap_
P:
1d
d2j7aq_
Q:
1e
d2j7ad_
D:
1f
d2j7ae_
E:
1g
d2j7ag_
G:
1h
d2j7ah_
H:
1i
d2j7aj_
J:
1j
d2j7ak_
K:
1k
d2j7am_
M:
1l
d2j7an_
N:
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_2j7aC00 (C:14-158)
1b: CATH_2j7aF00 (F:14-158)
1c: CATH_2j7aI00 (I:14-158)
1d: CATH_2j7aL00 (L:14-158)
1e: CATH_2j7aR00 (R:14-158)
1f: CATH_2j7aO00 (O:15-158)
2a: CATH_2j7aA02 (A:355-478)
2b: CATH_2j7aB02 (B:355-478)
2c: CATH_2j7aP02 (P:355-478)
2d: CATH_2j7aQ02 (Q:355-478)
2e: CATH_2j7aD02 (D:355-478)
2f: CATH_2j7aE02 (E:355-478)
2g: CATH_2j7aG02 (G:355-478)
2h: CATH_2j7aH02 (H:355-478)
2i: CATH_2j7aJ02 (J:355-478)
2j: CATH_2j7aK02 (K:355-478)
2k: CATH_2j7aM02 (M:355-478)
2l: CATH_2j7aN02 (N:355-478)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multiheme cytochrome fold
(2)
Homologous Superfamily
:
Di-heme elbow motif domain
(2)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
1a
2j7aC00
C:14-158
1b
2j7aF00
F:14-158
1c
2j7aI00
I:14-158
1d
2j7aL00
L:14-158
1e
2j7aR00
R:14-158
1f
2j7aO00
O:15-158
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Desulfovibrio vulgaris. Organism_taxid: 882. Strain: hildenborough.
(1)
2a
2j7aA02
A:355-478
2b
2j7aB02
B:355-478
2c
2j7aP02
P:355-478
2d
2j7aQ02
Q:355-478
2e
2j7aD02
D:355-478
2f
2j7aE02
E:355-478
2g
2j7aG02
G:355-478
2h
2j7aH02
H:355-478
2i
2j7aJ02
J:355-478
2j
2j7aK02
K:355-478
2k
2j7aM02
M:355-478
2l
2j7aN02
N:355-478
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Pfam Domains
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Asymmetric Unit 1
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