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2J6M
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788
Authors
:
C. -H. Yun, T. J. Boggon, Y. Li, S. Woo, H. Greulich, M. Meyerson, M. J. Eck
Date
:
29 Sep 06 (Deposition) - 03 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Cycle, Atp-Binding, Transferase, Polymorphism, Nucleotide-Binding, Alternative Splicing, Tyrosine-Protein Kinase, Epidermal Growth Factor, Ubl Conjugation, Phosphorylation, Disease Mutation, Glycoprotein, Anti- Oncogene, Transmembrane, Egfr, Kinase, Aee788, Membrane, Receptor, Wild-Type
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. -H. Yun, T. J. Boggon, Y. Li, S. Woo, H. Greulich, M. Meyerson, M. J. Eck
Structures Of Lung Cancer-Derived Egfr Mutants And Inhibitor Complexes: Mechanism Of Activation And Insights Into Differential Inhibitor Sensitivity
Cancer Cell V. 11 217 2007
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHY... (AEEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AEE
1
Ligand/Ion
6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PHENYL}-N-[(1R)-1-PHENYLETHYL]-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:743 , THR A:790 , GLN A:791 , MET A:793 , PRO A:794 , GLY A:796 , GLU A:804 , LEU A:844 , HOH A:3038
BINDING SITE FOR RESIDUE AEE A2021
[
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]
SAPs(SNPs)/Variants
(24, 24)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_026084 (E709A, chain A, )
02: VAR_069498 (E709G, chain A, )
03: VAR_026085 (E709K, chain A, )
04: VAR_026086 (G719A, chain A, )
05: VAR_026087 (G719C, chain A, )
06: VAR_026088 (G719D, chain A, )
07: VAR_019297 (G719S, chain A, )
08: VAR_026089 (G724S, chain A, )
09: VAR_026090 (E734K, chain A, )
10: VAR_026093 (L747F, chain A, )
11: VAR_026095 (R748P, chain A, )
12: VAR_069502 (S768I, chain A, )
13: VAR_069503 (V769M, chain A, )
14: VAR_026097 (Q787R, chain A, )
15: VAR_026098 (T790M, chain A, )
16: VAR_026099 (L833V, chain A, )
17: VAR_026100 (V834L, chain A, )
18: VAR_069504 (H835L, chain A, )
19: VAR_069505 (L838V, chain A, )
20: VAR_026101 (L858M, chain A, )
21: VAR_019298 (L858R, chain A, )
22: VAR_026102 (L861Q, chain A, )
23: VAR_026103 (G873E, chain A, )
24: VAR_019299 (R962G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026084
E
709
A
EGFR_HUMAN
Unclassified
---
A
E
709
A
02
UniProt
VAR_069498
E
709
G
EGFR_HUMAN
Unclassified
---
A
E
709
G
03
UniProt
VAR_026085
E
709
K
EGFR_HUMAN
Unclassified
---
A
E
709
K
04
UniProt
VAR_026086
G
719
A
EGFR_HUMAN
Unclassified
---
A
G
719
A
05
UniProt
VAR_026087
G
719
C
EGFR_HUMAN
Polymorphism
28929495
A
G
719
C
06
UniProt
VAR_026088
G
719
D
EGFR_HUMAN
Unclassified
---
A
G
719
D
07
UniProt
VAR_019297
G
719
S
EGFR_HUMAN
Unclassified
---
A
G
719
S
08
UniProt
VAR_026089
G
724
S
EGFR_HUMAN
Unclassified
---
A
G
724
S
09
UniProt
VAR_026090
E
734
K
EGFR_HUMAN
Unclassified
---
A
E
734
K
10
UniProt
VAR_026093
L
747
F
EGFR_HUMAN
Unclassified
---
A
L
747
F
11
UniProt
VAR_026095
R
748
P
EGFR_HUMAN
Unclassified
---
A
R
748
P
12
UniProt
VAR_069502
S
768
I
EGFR_HUMAN
Polymorphism
121913465
A
S
768
I
13
UniProt
VAR_069503
V
769
M
EGFR_HUMAN
Polymorphism
147149347
A
V
769
M
14
UniProt
VAR_026097
Q
787
R
EGFR_HUMAN
Unclassified
---
A
Q
787
R
15
UniProt
VAR_026098
T
790
M
EGFR_HUMAN
Unclassified
---
A
T
790
M
16
UniProt
VAR_026099
L
833
V
EGFR_HUMAN
Unclassified
---
A
L
833
V
17
UniProt
VAR_026100
V
834
L
EGFR_HUMAN
Unclassified
---
A
V
834
L
18
UniProt
VAR_069504
H
835
L
EGFR_HUMAN
Unclassified
---
A
H
835
L
19
UniProt
VAR_069505
L
838
V
EGFR_HUMAN
Unclassified
---
A
L
838
V
20
UniProt
VAR_026101
L
858
M
EGFR_HUMAN
Unclassified
---
A
L
858
M
21
UniProt
VAR_019298
L
858
R
EGFR_HUMAN
Polymorphism
121434568
A
L
858
R
22
UniProt
VAR_026102
L
861
Q
EGFR_HUMAN
Polymorphism
121913444
A
L
861
Q
23
UniProt
VAR_026103
G
873
E
EGFR_HUMAN
Unclassified
---
A
G
873
E
24
UniProt
VAR_019299
R
962
G
EGFR_HUMAN
Polymorphism
17337451
A
R
962
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:718-745)
2: PROTEIN_KINASE_TYR (A:833-845)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EGFR_HUMAN
718-745
1
A:718-745
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EGFR_HUMAN
833-845
1
A:833-845
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.24 (A:697-728)
Exon 1.25 (A:729-761)
Exon 1.26 (A:762-823)
Exon 1.27 (A:824-875)
Exon 1.28a (A:876-901)
Exon 1.29 (A:901-950)
Exon 1.30a (A:950-982)
Exon 1.31 (A:983-1020 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.23/1.24
2: Boundary 1.24/1.25
3: Boundary 1.25/1.26
4: Boundary 1.26/1.27
5: Boundary 1.27/1.28a
6: Boundary 1.28a/1.29
7: Boundary 1.29/1.30a
8: Boundary 1.30a/1.31
9: Boundary 1.31/1.32
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000275493
1e
ENSE00001841347
chr7:
55086794-55087058
265
EGFR_HUMAN
1-30
30
0
-
-
1.5
ENST00000275493
5
ENSE00001715021
chr7:
55209979-55210130
152
EGFR_HUMAN
30-80
51
0
-
-
1.6
ENST00000275493
6
ENSE00001704157
chr7:
55210998-55211181
184
EGFR_HUMAN
81-142
62
0
-
-
1.7b
ENST00000275493
7b
ENSE00001798125
chr7:
55214299-55214433
135
EGFR_HUMAN
142-187
46
0
-
-
1.8
ENST00000275493
8
ENSE00001683983
chr7:
55218987-55219055
69
EGFR_HUMAN
187-210
24
0
-
-
1.9
ENST00000275493
9
ENSE00001652975
chr7:
55220239-55220357
119
EGFR_HUMAN
210-249
40
0
-
-
1.10
ENST00000275493
10
ENSE00001623732
chr7:
55221704-55221845
142
EGFR_HUMAN
250-297
48
0
-
-
1.11
ENST00000275493
11
ENSE00001751179
chr7:
55223523-55223639
117
EGFR_HUMAN
297-336
40
0
-
-
1.12
ENST00000275493
12
ENSE00001084929
chr7:
55224226-55224352
127
EGFR_HUMAN
336-378
43
0
-
-
1.13a
ENST00000275493
13a
ENSE00001084931
chr7:
55224452-55224525
74
EGFR_HUMAN
378-403
26
0
-
-
1.14
ENST00000275493
14
ENSE00001084926
chr7:
55225356-55225446
91
EGFR_HUMAN
403-433
31
0
-
-
1.15
ENST00000275493
15
ENSE00001084941
chr7:
55227832-55228031
200
EGFR_HUMAN
433-500
68
0
-
-
1.16
ENST00000275493
16
ENSE00001084939
chr7:
55229192-55229324
133
EGFR_HUMAN
500-544
45
0
-
-
1.17
ENST00000275493
17
ENSE00001084927
chr7:
55231426-55231516
91
EGFR_HUMAN
544-574
31
0
-
-
1.18
ENST00000275493
18
ENSE00001627115
chr7:
55232973-55233130
158
EGFR_HUMAN
575-627
53
0
-
-
1.21
ENST00000275493
21
ENSE00001768076
chr7:
55238868-55238906
39
EGFR_HUMAN
627-640
14
0
-
-
1.23
ENST00000275493
23
ENSE00001699330
chr7:
55240676-55240817
142
EGFR_HUMAN
640-687
48
0
-
-
1.24
ENST00000275493
24
ENSE00001778519
chr7:
55241614-55241736
123
EGFR_HUMAN
688-728
41
1
A:697-728
32
1.25
ENST00000275493
25
ENSE00001756460
chr7:
55242415-55242513
99
EGFR_HUMAN
729-761
33
1
A:729-761
33
1.26
ENST00000275493
26
ENSE00001601336
chr7:
55248986-55249171
186
EGFR_HUMAN
762-823
62
1
A:762-823
62
1.27
ENST00000275493
27
ENSE00001681524
chr7:
55259412-55259567
156
EGFR_HUMAN
824-875
52
1
A:824-875
52
1.28a
ENST00000275493
28a
ENSE00001631695
chr7:
55260459-55260534
76
EGFR_HUMAN
876-901
26
1
A:876-901
26
1.29
ENST00000275493
29
ENSE00001779947
chr7:
55266410-55266556
147
EGFR_HUMAN
901-950
50
1
A:901-950
50
1.30a
ENST00000275493
30a
ENSE00001790701
chr7:
55268009-55268106
98
EGFR_HUMAN
950-982
33
1
A:950-982
33
1.31
ENST00000275493
31
ENSE00001801208
chr7:
55268881-55269048
168
EGFR_HUMAN
983-1038
56
1
A:983-1020 (gaps)
38
1.32
ENST00000275493
32
ENSE00001773562
chr7:
55269428-55269475
48
EGFR_HUMAN
1039-1054
16
0
-
-
1.33a
ENST00000275493
33a
ENSE00001795780
chr7:
55270210-55270318
109
EGFR_HUMAN
1055-1091
37
0
-
-
1.34b
ENST00000275493
34b
ENSE00001245887
chr7:
55272949-55279321
6373
EGFR_HUMAN
1091-1210
120
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2j6ma_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2j6ma_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2j6mA01 (A:697-792)
2a: CATH_2j6mA02 (A:793-1004)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2j6mA01
A:697-792
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2j6mA02
A:793-1004
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
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