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2J6L
Biol. Unit 2
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (726 KB)
Biol.Unit 2 (734 KB)
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(1)
Title
:
STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE
Authors
:
G. Bunkoczi, K. Guo, J. E. Debreczeni, C. Smee, C. Arrowsmith, A. Edward M. Sundstrom, J. Weigelt, F. Von Delft, U. Oppermann
Date
:
29 Sep 06 (Deposition) - 12 Oct 06 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Aldehyde Dehydrogenase, Nad, Reductase, Oxidoreductase, Lysine Catabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Brocker, N. Lassen, T. Estey, A. Pappa, M. Cantore, V. V. Orlova, T. Chavakis, K. L. Kavanagh, U. Oppermann, V. Vasiliou
Aldehyde Dehydrogenase 7A1 (Aldh7A1) Is A Novel Enzyme Involved In Cellular Defense Against Hyperosmotic Stress.
J. Biol. Chem. V. 285 18452 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
3a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
3b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
3c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
3d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
3e: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIe)
3f: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIf)
3g: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIg)
3h: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIh)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC5 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:349 , SER A:352 , MET F:353
BINDING SITE FOR RESIDUE BR A1502
02
AC5
SOFTWARE
GLN E:349 , SER E:352
BINDING SITE FOR RESIDUE BR B1503
03
BC2
SOFTWARE
HOH E:2436
BINDING SITE FOR RESIDUE BR C1504
04
BC5
SOFTWARE
GLY E:462
BINDING SITE FOR RESIDUE BR E1502
05
BC6
SOFTWARE
LYS B:348 , GLU E:359 , LYS E:362 , HOH E:2464
BINDING SITE FOR RESIDUE BR E1503
06
BC7
SOFTWARE
ARG C:331 , PRO E:217 , GLY E:218
BINDING SITE FOR RESIDUE BR E1504
07
BC8
SOFTWARE
ARG E:377 , GLY E:379 , HOH E:2490 , HOH E:2491 , HOH E:2500 , HOH E:2501
BINDING SITE FOR RESIDUE NA E1505
08
BC9
SOFTWARE
ARG F:377 , GLY F:379 , HOH F:2490 , HOH F:2491 , HOH F:2498 , HOH F:2499
BINDING SITE FOR RESIDUE NA F1503
09
CC1
SOFTWARE
GLY G:462
BINDING SITE FOR RESIDUE BR G1502
10
CC2
SOFTWARE
ARG G:377 , GLY G:379 , HOH G:2516 , HOH G:2517 , HOH G:2522 , HOH G:2525
BINDING SITE FOR RESIDUE NA G1503
11
CC3
SOFTWARE
GLY H:462
BINDING SITE FOR RESIDUE BR H1502
12
CC4
SOFTWARE
ARG H:377 , GLY H:379 , HOH H:2498 , HOH H:2504 , HOH H:2505
BINDING SITE FOR RESIDUE NA H1503
13
CC9
SOFTWARE
ILE E:164 , THR E:165 , ALA E:166 , PHE E:167 , ASN E:168 , LYS E:191 , GLY E:192 , ALA E:193 , PRO E:194 , ALA E:228 , GLY E:231 , THR E:232 , PHE E:245 , THR E:246 , GLY E:247 , SER E:248 , VAL E:251 , GLU E:269 , LEU E:270 , GLY E:271 , CYS E:303 , GLU E:400 , PHE E:402 , PHE E:469 , HOH E:2605 , HOH E:2633 , HOH E:2635 , HOH E:2636 , HOH E:2637 , HOH E:2638 , HOH E:2639 , HOH E:2641
BINDING SITE FOR RESIDUE NAI E1501
14
DC1
SOFTWARE
ILE F:164 , THR F:165 , ALA F:166 , PHE F:167 , ASN F:168 , LYS F:191 , GLY F:192 , ALA F:193 , PRO F:194 , ALA F:228 , GLY F:231 , THR F:232 , PHE F:245 , THR F:246 , GLY F:247 , SER F:248 , VAL F:251 , GLU F:269 , LEU F:270 , GLY F:271 , CYS F:303 , GLU F:400 , PHE F:402 , PHE F:469 , HOH F:2601 , HOH F:2626 , HOH F:2627 , HOH F:2628 , HOH F:2629 , HOH F:2630 , HOH F:2631
BINDING SITE FOR RESIDUE NAI F1501
15
DC2
SOFTWARE
ILE G:164 , THR G:165 , ALA G:166 , PHE G:167 , ASN G:168 , LYS G:191 , GLY G:192 , ALA G:193 , PRO G:194 , ALA G:228 , GLY G:231 , THR G:232 , PHE G:245 , THR G:246 , GLY G:247 , SER G:248 , VAL G:251 , VAL G:255 , GLU G:269 , LEU G:270 , GLY G:271 , CYS G:303 , GLU G:400 , PHE G:402 , PHE G:469 , HOH G:2429 , HOH G:2617 , HOH G:2646 , HOH G:2647 , HOH G:2648 , HOH G:2649 , HOH G:2651 , HOH G:2653
BINDING SITE FOR RESIDUE NAI G1501
16
DC3
SOFTWARE
ILE H:164 , THR H:165 , ALA H:166 , PHE H:167 , ASN H:168 , LYS H:191 , GLY H:192 , ALA H:193 , PRO H:194 , ALA H:228 , GLY H:231 , THR H:232 , PHE H:245 , THR H:246 , GLY H:247 , SER H:248 , VAL H:251 , VAL H:255 , GLU H:269 , LEU H:270 , GLY H:271 , CYS H:303 , GLU H:400 , PHE H:402 , PHE H:469 , HOH H:2607 , HOH H:2632 , HOH H:2633 , HOH H:2634 , HOH H:2635 , HOH H:2636 , HOH H:2637 , HOH H:2638
BINDING SITE FOR RESIDUE NAI H1501
[
close Site info
]
SAPs(SNPs)/Variants
(10, 40)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_031718 (A172V, chain E/F/G/H, )
02: VAR_069184 (G175V, chain E/F/G/H, )
03: VAR_069185 (G264E, chain E/F/G/H, )
04: VAR_069186 (N274I, chain E/F/G/H, )
05: VAR_069187 (R308Q, chain E/F/G/H, )
06: VAR_069188 (V368G, chain E/F/G/H, )
07: VAR_028202 (T385A, chain E/F/G/H, )
08: VAR_031719 (E400Q, chain E/F/G/H, )
09: VAR_028203 (Q412Q, chain E/F/G/H, )
10: VAR_069189 (S431N, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_031718
A
199
V
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
A
172
V
02
UniProt
VAR_069184
G
202
V
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
G
175
V
03
UniProt
VAR_069185
G
291
E
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
G
264
E
04
UniProt
VAR_069186
N
301
I
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
N
274
I
05
UniProt
VAR_069187
R
335
Q
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
R
308
Q
06
UniProt
VAR_069188
V
395
G
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
V
368
G
07
UniProt
VAR_028202
T
412
A
AL7A1_HUMAN
Polymorphism
2306618
E/F/G/H
T
385
A
08
UniProt
VAR_031719
E
427
Q
AL7A1_HUMAN
Disease (PDE)
121912707
E/F/G/H
E
400
Q
09
UniProt
VAR_028203
K
439
Q
AL7A1_HUMAN
Polymorphism
12514417
E/F/G/H
Q
412
Q
10
UniProt
VAR_069189
S
458
N
AL7A1_HUMAN
Disease (PDE)
---
E/F/G/H
S
431
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (E:268-275,F:268-275,G:268-275,H:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL7A1_HUMAN
295-302
4
-
-
-
-
E:268-275
F:268-275
G:268-275
H:268-275
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2j6la_ (A:)
1b: SCOP_d2j6lb_ (B:)
1c: SCOP_d2j6lc_ (C:)
1d: SCOP_d2j6ld_ (D:)
1e: SCOP_d2j6le_ (E:)
1f: SCOP_d2j6lf_ (F:)
1g: SCOP_d2j6lg_ (G:)
1h: SCOP_d2j6lh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2j6la_
A:
1b
d2j6lb_
B:
1c
d2j6lc_
C:
1d
d2j6ld_
D:
1e
d2j6le_
E:
1f
d2j6lf_
F:
1g
d2j6lg_
G:
1h
d2j6lh_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (726 KB)
Header - Biol.Unit 1
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