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2J5Z
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
H-FICOLIN COMPLEXED TO GALACTOSE
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
21 Sep 06 (Deposition) - 23 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hydroxylation, Alternative Splicing, Lectin, Collagen, Immunology, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: BETA-D-GALACTOSE (GALa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
3
Ligand/Ion
CALCIUM ION
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:226 , SER A:234 , CYS A:235 , TYR A:236 , TYR A:254 , VAL A:264 , HOH A:2170
BINDING SITE FOR RESIDUE GAL A1278
2
AC2
SOFTWARE
ASP A:214 , ASP A:216 , SER A:218 , SER A:220 , HOH A:2123 , HOH A:2127
BINDING SITE FOR RESIDUE CA A1277
3
AC3
SOFTWARE
GLU A:143 , HIS A:146 , GLY A:179 , GLU A:180 , HOH A:2095 , HOH A:2171 , SER B:220
BINDING SITE FOR RESIDUE ACT A1279
4
AC4
SOFTWARE
ASP B:214 , ASP B:216 , SER B:218 , SER B:220 , HOH B:2127 , HOH B:2135
BINDING SITE FOR RESIDUE CA B1277
5
AC5
SOFTWARE
ASP C:214 , ASP C:216 , SER C:218 , SER C:220 , HOH C:2084 , HOH C:2087
BINDING SITE FOR RESIDUE CA C1277
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_1 (A:230-242,B:230-242,C:230-242)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN3_HUMAN
253-265
3
A:230-242
B:230-242
C:230-242
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Exons
(5, 15)
Info
All Exons
Exon 1.2e (A:63-66 | B:66-66 | C:66-66)
Exon 1.2f (A:66-108 | B:66-108 | C:66-108)
Exon 1.3 (A:109-152 | B:109-152 | C:109-152)
Exon 1.4a (A:152-197 | B:152-197 | C:152-197)
Exon 1.5 (A:197-276 | B:197-276 | C:197-276)
View:
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All Exon Boundaries
1: Boundary 1.2c/1.2e
2: Boundary 1.2e/1.2f
3: Boundary 1.2f/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/1.5
6: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000270879
1a
ENSE00001153243
chr1:
27701315-27701219
97
FCN3_HUMAN
1-31
31
0
-
-
1.2a
ENST00000270879
2a
ENSE00000956155
chr1:
27700942-27700847
96
FCN3_HUMAN
31-63
33
0
-
-
1.2c
ENST00000270879
2c
ENSE00000956156
chr1:
27700500-27700456
45
FCN3_HUMAN
63-78
16
0
-
-
1.2e
ENST00000270879
2e
ENSE00000956157
chr1:
27700011-27699979
33
FCN3_HUMAN
78-89
12
3
A:63-66
B:66-66
C:66-66
4
1
1
1.2f
ENST00000270879
2f
ENSE00000956158
chr1:
27699754-27699627
128
FCN3_HUMAN
89-131
43
3
A:66-108
B:66-108
C:66-108
43
43
43
1.3
ENST00000270879
3
ENSE00000956159
chr1:
27697463-27697334
130
FCN3_HUMAN
132-175
44
3
A:109-152
B:109-152
C:109-152
44
44
44
1.4a
ENST00000270879
4a
ENSE00000956160
chr1:
27697221-27697087
135
FCN3_HUMAN
175-220
46
3
A:152-197
B:152-197
C:152-197
46
46
46
1.5
ENST00000270879
5
ENSE00001037666
chr1:
27695968-27695603
366
FCN3_HUMAN
220-299
80
3
A:197-276
B:197-276
C:197-276
80
80
80
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2j5za_ (A:)
1b: SCOP_d2j5zb_ (B:)
1c: SCOP_d2j5zc_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j5za_
A:
1b
d2j5zb_
B:
1c
d2j5zc_
C:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2j5zA01 (A:63-196,A:270-276)
1b: CATH_2j5zB01 (B:66-196,B:270-276)
1c: CATH_2j5zC01 (C:66-196,C:270-276)
2a: CATH_2j5zA02 (A:197-269)
2b: CATH_2j5zB02 (B:197-269)
2c: CATH_2j5zC02 (C:197-269)
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)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j5zA01
A:63-196,A:270-276
1b
2j5zB01
B:66-196,B:270-276
1c
2j5zC01
C:66-196,C:270-276
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j5zA02
A:197-269
2b
2j5zB02
B:197-269
2c
2j5zC02
C:197-269
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (123 KB)
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