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Getting 'PROSITE' information from database.
2J5T
Biol. Unit 2
Info
Asym.Unit (437 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (112 KB)
Biol.Unit 4 (110 KB)
Biol.Unit 5 (114 KB)
Biol.Unit 6 (114 KB)
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(1)
Title
:
GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMATE
Authors
:
C. Marco-Marin, F. Gil-Ortiz, I. Perez-Arellano, J. Cervera, I. Fita,
Date
:
19 Sep 06 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Proline Biosynthesis, Transferase, Feedback Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Marco-Marin, F. Gil-Ortiz, I. Perez-Arellano, J. Cervera, I. Fita V. Rubio
A Novel Two-Domain Architecture Within The Amino Acid Kinase Enzyme Family Revealed By The Crystal Structure Of Escherichia Coli Glutamate 5-Kinase.
J. Mol. Biol. V. 367 1431 2007
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
2e: GLUTAMIC ACID (GLUe)
2f: GLUTAMIC ACID (GLUf)
2g: GLUTAMIC ACID (GLUg)
2h: GLUTAMIC ACID (GLUh)
2i: GLUTAMIC ACID (GLUi)
2j: GLUTAMIC ACID (GLUj)
2k: GLUTAMIC ACID (GLUk)
2l: GLUTAMIC ACID (GLUl)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC7 (SOFTWARE)
15: DC8 (SOFTWARE)
16: DC9 (SOFTWARE)
17: EC1 (SOFTWARE)
18: EC2 (SOFTWARE)
19: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
ASP E:204
BINDING SITE FOR RESIDUE MG E1370
02
BC7
SOFTWARE
SER E:14 , THR E:169 , ASP E:170 , LYS E:217
BINDING SITE FOR RESIDUE SO4 E1371
03
BC8
SOFTWARE
ARG E:33 , HOH G:2001
BINDING SITE FOR RESIDUE CL E1374
04
BC9
SOFTWARE
ARG E:267
BINDING SITE FOR RESIDUE CL E1375
05
CC1
SOFTWARE
ALA F:67
BINDING SITE FOR RESIDUE CL E1376
06
CC2
SOFTWARE
LYS F:10 , GLY F:12 , THR F:13 , SER F:14 , THR F:169 , ASP F:170 , LYS F:217
BINDING SITE FOR RESIDUE SO4 F1370
07
CC3
SOFTWARE
ARG F:33
BINDING SITE FOR RESIDUE CL F1373
08
CC4
SOFTWARE
ARG F:267
BINDING SITE FOR RESIDUE CL F1374
09
CC5
SOFTWARE
GLY G:12 , THR G:13 , SER G:14 , LEU G:168 , THR G:169 , LYS G:217
BINDING SITE FOR RESIDUE SO4 G1370
10
CC6
SOFTWARE
ARG G:309
BINDING SITE FOR RESIDUE CL G1374
11
CC7
SOFTWARE
ARG G:33 , HOH G:2001
BINDING SITE FOR RESIDUE CL G1375
12
CC8
SOFTWARE
GLY H:12 , THR H:13 , SER H:14 , THR H:169 , ASP H:170 , LYS H:217
BINDING SITE FOR RESIDUE SO4 H1369
13
CC9
SOFTWARE
ARG H:33 , GLN H:37
BINDING SITE FOR RESIDUE CL H1370
14
DC7
SOFTWARE
ASP E:281 , ALA E:284 , LEU E:296 , GLY E:299
BINDING SITE FOR RESIDUE GLU E1372
15
DC8
SOFTWARE
SER E:50 , ALA E:52 , ILE E:53 , ASN E:134 , ASP E:137 , ASP E:148 , ASN E:149
BINDING SITE FOR RESIDUE GLU E1373
16
DC9
SOFTWARE
ASP F:281 , GLY F:283 , ALA F:284 , GLY F:299 , HOH F:2012
BINDING SITE FOR RESIDUE GLU F1371
17
EC1
SOFTWARE
SER F:50 , GLY F:51 , ALA F:52 , ILE F:53 , ASN F:134 , ASP F:137 , ASP F:148 , ASN F:149
BINDING SITE FOR RESIDUE GLU F1372
18
EC2
SOFTWARE
ASP G:281 , GLY G:283 , ALA G:284 , LEU G:296 , HOH G:2013
BINDING SITE FOR RESIDUE GLU G1371
19
EC3
SOFTWARE
SER G:50 , GLY G:51 , ALA G:52 , ILE G:53 , ASN G:134 , ASP G:137 , ASP G:148 , ASN G:149
BINDING SITE FOR RESIDUE GLU G1372
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLUTAMATE_5_KINASE (E:207-224,F:214-224,G:212-224,H:21...)
2: PUA (E:275-353,F:275-353,G:275-353,H:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAMATE_5_KINASE
PS00902
Glutamate 5-kinase signature.
PROB_ECOLI
207-224
4
-
-
-
-
E:207-224
F:214-224
G:212-224
H:214-224
2
PUA
PS50890
PUA domain profile.
PROB_ECOLI
275-353
4
-
-
-
-
E:275-353
F:275-353
G:275-353
H:275-353
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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by Chain (Biol. Unit)
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by SCOP Domain
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Search Term(s)
Show PDB file:
Asym.Unit (437 KB)
Header - Asym.Unit
Biol.Unit 1 (218 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
Biol.Unit 3 (112 KB)
Header - Biol.Unit 3
Biol.Unit 4 (110 KB)
Header - Biol.Unit 4
Biol.Unit 5 (114 KB)
Header - Biol.Unit 5
Biol.Unit 6 (114 KB)
Header - Biol.Unit 6
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