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2J5T
Biol. Unit 1
Info
Asym.Unit (437 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (112 KB)
Biol.Unit 4 (110 KB)
Biol.Unit 5 (114 KB)
Biol.Unit 6 (114 KB)
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(1)
Title
:
GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMATE
Authors
:
C. Marco-Marin, F. Gil-Ortiz, I. Perez-Arellano, J. Cervera, I. Fita,
Date
:
19 Sep 06 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Proline Biosynthesis, Transferase, Feedback Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Marco-Marin, F. Gil-Ortiz, I. Perez-Arellano, J. Cervera, I. Fita V. Rubio
A Novel Two-Domain Architecture Within The Amino Acid Kinase Enzyme Family Revealed By The Crystal Structure Of Escherichia Coli Glutamate 5-Kinase.
J. Mol. Biol. V. 367 1431 2007
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
2e: GLUTAMIC ACID (GLUe)
2f: GLUTAMIC ACID (GLUf)
2g: GLUTAMIC ACID (GLUg)
2h: GLUTAMIC ACID (GLUh)
2i: GLUTAMIC ACID (GLUi)
2j: GLUTAMIC ACID (GLUj)
2k: GLUTAMIC ACID (GLUk)
2l: GLUTAMIC ACID (GLUl)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:12 , THR A:13 , SER A:14 , THR A:169
BINDING SITE FOR RESIDUE SO4 A1372
02
AC2
SOFTWARE
ARG A:267
BINDING SITE FOR RESIDUE CL A1375
03
AC3
SOFTWARE
ARG A:33 , GLN A:37
BINDING SITE FOR RESIDUE CL A1376
04
AC4
SOFTWARE
ARG A:265
BINDING SITE FOR RESIDUE CL A1377
05
AC5
SOFTWARE
LYS B:10 , GLY B:12 , THR B:13 , SER B:14 , LEU B:168 , THR B:169 , ASP B:170 , LYS B:217
BINDING SITE FOR RESIDUE SO4 B1370
06
AC6
SOFTWARE
ARG A:82
BINDING SITE FOR RESIDUE CL B1372
07
AC7
SOFTWARE
ARG B:33 , GLN B:37
BINDING SITE FOR RESIDUE CL B1373
08
AC8
SOFTWARE
ARG B:267
BINDING SITE FOR RESIDUE CL B1374
09
AC9
SOFTWARE
SER C:14 , THR C:169 , LYS C:217
BINDING SITE FOR RESIDUE SO4 C1370
10
BC1
SOFTWARE
ARG C:33 , GLN C:37
BINDING SITE FOR RESIDUE CL C1372
11
BC2
SOFTWARE
ASP D:204
BINDING SITE FOR RESIDUE MG D1369
12
BC3
SOFTWARE
GLY D:12 , SER D:14 , VAL D:15 , LEU D:168 , THR D:169 , ASP D:170 , LYS D:217
BINDING SITE FOR RESIDUE SO4 D1370
13
BC4
SOFTWARE
ARG D:33
BINDING SITE FOR RESIDUE CL D1373
14
BC5
SOFTWARE
ARG D:267
BINDING SITE FOR RESIDUE CL D1374
15
DC1
SOFTWARE
ASP A:281 , GLY A:283 , ALA A:284 , LEU A:296 , LYS A:298 , GLY A:299
BINDING SITE FOR RESIDUE GLU A1373
16
DC2
SOFTWARE
SER A:50 , GLY A:51 , ALA A:52 , ILE A:53 , ASN A:134 , ASP A:137 , ASP A:148 , ASN A:149 , HOH A:2017
BINDING SITE FOR RESIDUE GLU A1374
17
DC3
SOFTWARE
SER B:50 , GLY B:51 , ALA B:52 , ILE B:53 , ASN B:134 , ASP B:137 , ASN B:149
BINDING SITE FOR RESIDUE GLU B1371
18
DC4
SOFTWARE
SER C:50 , GLY C:51 , ALA C:52 , ASN C:134 , ASP C:137 , ASP C:148 , ASN C:149
BINDING SITE FOR RESIDUE GLU C1371
19
DC5
SOFTWARE
ASP D:281 , GLY D:283 , ALA D:284 , ALA D:287 , SER D:294
BINDING SITE FOR RESIDUE GLU D1371
20
DC6
SOFTWARE
SER D:50 , GLY D:51 , ALA D:52 , ILE D:53 , ASN D:134 , ASP D:137 , ASP D:148 , ASN D:149
BINDING SITE FOR RESIDUE GLU D1372
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLUTAMATE_5_KINASE (A:212-224,B:214-224,C:212-224,D:20...)
2: PUA (A:275-353,B:275-353,C:275-353,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAMATE_5_KINASE
PS00902
Glutamate 5-kinase signature.
PROB_ECOLI
207-224
4
A:212-224
B:214-224
C:212-224
D:207-224
-
-
-
-
2
PUA
PS50890
PUA domain profile.
PROB_ECOLI
275-353
4
A:275-353
B:275-353
C:275-353
D:275-353
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Miscellaneous
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (437 KB)
Header - Asym.Unit
Biol.Unit 1 (218 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
Biol.Unit 3 (112 KB)
Header - Biol.Unit 3
Biol.Unit 4 (110 KB)
Header - Biol.Unit 4
Biol.Unit 5 (114 KB)
Header - Biol.Unit 5
Biol.Unit 6 (114 KB)
Header - Biol.Unit 6
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