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2J59
Biol. Unit 1
Info
Asym.Unit (322 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (58 KB)
Biol.Unit 5 (57 KB)
Biol.Unit 6 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ARF1:ARHGAP21-ARFBD COMPLEX
Authors
:
J. Menetrey, M. Perderiset, J. Cicolari, T. Dubois, N. El Khatib, F. El Khadali, M. Franco, P. Chavrier, A. Houdusse
Date
:
13 Sep 06 (Deposition) - 20 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,M,N,O,P,Q,R
Biol. Unit 1: A,M (1x)
Biol. Unit 2: B,N (1x)
Biol. Unit 3: D,P (1x)
Biol. Unit 4: E,Q (1x)
Biol. Unit 5: C,O (1x)
Biol. Unit 6: F,R (1x)
Keywords
:
Arf, Arf1, Arfbd, Arhgap21, Myristate, Transport, Nucleotide-Binding, Rhogap Protein, Hydrolase, Protein Transport, Actin Organization, Small Gtp-Binding Protein, Golgi Apparatus
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Menetrey, M. Perderiset, J. Cicolari, T. Dubois, N. El Khatib, F. El Khadali, M. Franco, P. Chavrier, A. Houdusse
Structural Basis For Arf1-Mediated Recruitment Of Arhgap21 To Golgi Membranes.
Embo J. V. 26 1953 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
1b: 1,4-DIETHYLENE DIOXIDE (DIOb)
1c: 1,4-DIETHYLENE DIOXIDE (DIOc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
3d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
3e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
3f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIO
1
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
3
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: BC4 (SOFTWARE)
4: CC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:26 , ALA A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , THR A:45 , PRO A:47 , THR A:48 , GLY A:69 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , CYS A:159 , ALA A:160 , MG A:1182 , HOH A:3031 , HOH A:3044 , HOH A:3074 , HOH A:3184 , HOH A:3185 , HOH A:3186 , HOH A:3187 , HOH A:3188
BINDING SITE FOR RESIDUE GTP A1181
2
AC2
SOFTWARE
THR A:31 , THR A:48 , GTP A:1181 , HOH A:3074 , HOH A:3188
BINDING SITE FOR RESIDUE MG A1182
3
BC4
SOFTWARE
ARG M:940 , TRP M:957 , THR M:1002 , LYS M:1003 , HOH M:3120
BINDING SITE FOR RESIDUE SO4 M2064
4
CC1
SOFTWARE
TRP A:153 , TYR A:154 , ILE A:155 , TRP D:153 , TYR D:154 , ILE D:155
BINDING SITE FOR RESIDUE DIO A1183
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2j59m1 (M:931-1063)
1b: SCOP_d2j59n_ (N:)
1c: SCOP_d2j59o_ (O:)
1d: SCOP_d2j59p_ (P:)
1e: SCOP_d2j59q_ (Q:)
1f: SCOP_d2j59r_ (R:)
2a: SCOP_d2j59a_ (A:)
2b: SCOP_d2j59b_ (B:)
2c: SCOP_d2j59c_ (C:)
2d: SCOP_d2j59d_ (D:)
2e: SCOP_d2j59e_ (E:)
2f: SCOP_d2j59f_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Rho GTPase-activating protein 21
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2j59m1
M:931-1063
1b
d2j59n_
N:
1c
d2j59o_
O:
1d
d2j59p_
P:
1e
d2j59q_
Q:
1f
d2j59r_
R:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Human (Homo sapiens), ARF1 [TaxId: 9606]
(12)
2a
d2j59a_
A:
2b
d2j59b_
B:
2c
d2j59c_
C:
2d
d2j59d_
D:
2e
d2j59e_
E:
2f
d2j59f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2j59A00 (A:16-180)
1b: CATH_2j59C00 (C:16-180)
1c: CATH_2j59D00 (D:16-180)
1d: CATH_2j59E00 (E:16-180)
1e: CATH_2j59F00 (F:16-180)
1f: CATH_2j59B00 (B:16-180)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Mouse (Mus musculus)
(17)
1a
2j59A00
A:16-180
1b
2j59C00
C:16-180
1c
2j59D00
D:16-180
1d
2j59E00
E:16-180
1e
2j59F00
F:16-180
1f
2j59B00
B:16-180
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (322 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
Biol.Unit 3 (57 KB)
Header - Biol.Unit 3
Biol.Unit 4 (58 KB)
Header - Biol.Unit 4
Biol.Unit 5 (57 KB)
Header - Biol.Unit 5
Biol.Unit 6 (57 KB)
Header - Biol.Unit 6
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