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2J59
Asym. Unit
Info
Asym.Unit (322 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (58 KB)
Biol.Unit 5 (57 KB)
Biol.Unit 6 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ARF1:ARHGAP21-ARFBD COMPLEX
Authors
:
J. Menetrey, M. Perderiset, J. Cicolari, T. Dubois, N. El Khatib, F. El Khadali, M. Franco, P. Chavrier, A. Houdusse
Date
:
13 Sep 06 (Deposition) - 20 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,M,N,O,P,Q,R
Biol. Unit 1: A,M (1x)
Biol. Unit 2: B,N (1x)
Biol. Unit 3: D,P (1x)
Biol. Unit 4: E,Q (1x)
Biol. Unit 5: C,O (1x)
Biol. Unit 6: F,R (1x)
Keywords
:
Arf, Arf1, Arfbd, Arhgap21, Myristate, Transport, Nucleotide-Binding, Rhogap Protein, Hydrolase, Protein Transport, Actin Organization, Small Gtp-Binding Protein, Golgi Apparatus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Menetrey, M. Perderiset, J. Cicolari, T. Dubois, N. El Khatib, F. El Khadali, M. Franco, P. Chavrier, A. Houdusse
Structural Basis For Arf1-Mediated Recruitment Of Arhgap21 To Golgi Membranes.
Embo J. V. 26 1953 2007
(for further references see the
PDB file header
)
[
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]
Hetero Components
(5, 24)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
1b: 1,4-DIETHYLENE DIOXIDE (DIOb)
1c: 1,4-DIETHYLENE DIOXIDE (DIOc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
3d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
3e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
3f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIO
3
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
GTP
6
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
4
MG
6
Ligand/Ion
MAGNESIUM ION
5
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:26 , ALA A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , THR A:45 , PRO A:47 , THR A:48 , GLY A:69 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , CYS A:159 , ALA A:160 , MG A:1182 , HOH A:3031 , HOH A:3044 , HOH A:3074 , HOH A:3184 , HOH A:3185 , HOH A:3186 , HOH A:3187 , HOH A:3188
BINDING SITE FOR RESIDUE GTP A1181
02
AC2
SOFTWARE
THR A:31 , THR A:48 , GTP A:1181 , HOH A:3074 , HOH A:3188
BINDING SITE FOR RESIDUE MG A1182
03
AC3
SOFTWARE
ASP B:26 , ALA B:27 , ALA B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , THR B:45 , PRO B:47 , THR B:48 , GLY B:69 , GLY B:70 , ASN B:126 , LYS B:127 , ASP B:129 , LEU B:130 , CYS B:159 , ALA B:160 , MG B:1182 , HOH B:3025 , HOH B:3031 , HOH B:3033 , HOH B:3064 , HOH B:3176 , HOH B:3177 , HOH B:3178 , HOH B:3179
BINDING SITE FOR RESIDUE GTP B1181
04
AC4
SOFTWARE
THR B:31 , THR B:48 , GTP B:1181 , HOH B:3033 , HOH B:3064
BINDING SITE FOR RESIDUE MG B1182
05
AC5
SOFTWARE
ASP C:26 , ALA C:27 , ALA C:28 , GLY C:29 , LYS C:30 , THR C:31 , THR C:32 , THR C:45 , THR C:48 , GLY C:69 , GLY C:70 , ASN C:126 , LYS C:127 , ASP C:129 , LEU C:130 , CYS C:159 , ALA C:160 , MG C:1182 , HOH C:3018 , HOH C:3036 , HOH C:3060 , HOH C:3173 , HOH C:3174 , HOH C:3175 , HOH C:3176 , HOH C:3177 , HOH C:3178
BINDING SITE FOR RESIDUE GTP C1181
06
AC6
SOFTWARE
THR C:31 , THR C:48 , GTP C:1181 , HOH C:3036 , HOH C:3060
BINDING SITE FOR RESIDUE MG C1182
07
AC7
SOFTWARE
ASP D:26 , ALA D:27 , ALA D:28 , GLY D:29 , LYS D:30 , THR D:31 , THR D:32 , THR D:45 , THR D:48 , GLY D:69 , GLY D:70 , ASN D:126 , LYS D:127 , ASP D:129 , LEU D:130 , CYS D:159 , ALA D:160 , MG D:1182 , HOH D:3035 , HOH D:3063 , HOH D:3172 , HOH D:3174 , HOH D:3175 , HOH D:3176 , HOH D:3177
BINDING SITE FOR RESIDUE GTP D1181
08
AC8
SOFTWARE
THR D:31 , THR D:48 , GTP D:1181 , HOH D:3035 , HOH D:3063
BINDING SITE FOR RESIDUE MG D1182
09
AC9
SOFTWARE
ASP E:26 , ALA E:27 , ALA E:28 , GLY E:29 , LYS E:30 , THR E:31 , THR E:32 , THR E:45 , PRO E:47 , THR E:48 , GLY E:69 , GLY E:70 , ASN E:126 , LYS E:127 , ASP E:129 , LEU E:130 , CYS E:159 , ALA E:160 , MG E:1182 , HOH E:3029 , HOH E:3038 , HOH E:3076 , HOH E:3190 , HOH E:3191 , HOH E:3192 , HOH E:3193 , HOH E:3194 , HOH E:3195 , HOH E:3196
BINDING SITE FOR RESIDUE GTP E1181
10
BC1
SOFTWARE
THR E:31 , THR E:48 , GTP E:1181 , HOH E:3038 , HOH E:3076
BINDING SITE FOR RESIDUE MG E1182
11
BC2
SOFTWARE
ASP F:26 , ALA F:27 , ALA F:28 , GLY F:29 , LYS F:30 , THR F:31 , THR F:32 , THR F:45 , PRO F:47 , THR F:48 , GLY F:69 , GLY F:70 , ASN F:126 , LYS F:127 , ASP F:129 , LEU F:130 , CYS F:159 , ALA F:160 , MG F:1182 , HOH F:3027 , HOH F:3059 , HOH F:3156 , HOH F:3157 , HOH F:3158 , HOH F:3161 , HOH F:3162
BINDING SITE FOR RESIDUE GTP F1181
12
BC3
SOFTWARE
THR F:31 , THR F:48 , GTP F:1181 , HOH F:3059 , HOH F:3157
BINDING SITE FOR RESIDUE MG F1182
13
BC4
SOFTWARE
ARG M:940 , TRP M:957 , THR M:1002 , LYS M:1003 , HOH M:3120
BINDING SITE FOR RESIDUE SO4 M2064
14
BC5
SOFTWARE
ARG N:940 , TRP N:957 , THR N:1002 , LYS N:1003 , HOH N:3103
BINDING SITE FOR RESIDUE SO4 N2064
15
BC6
SOFTWARE
ARG O:940 , TRP O:957 , THR O:1002 , LYS O:1003 , HOH O:3075
BINDING SITE FOR RESIDUE SO4 O2062
16
BC7
SOFTWARE
ARG P:940 , TRP P:957 , THR P:1002 , LYS P:1003 , HOH P:3093
BINDING SITE FOR RESIDUE SO4 P2064
17
BC8
SOFTWARE
ARG Q:940 , TRP Q:957 , THR Q:1002 , LYS Q:1003
BINDING SITE FOR RESIDUE SO4 Q2064
18
BC9
SOFTWARE
ARG R:940 , TRP R:957 , THR R:1002 , LYS R:1003 , HOH R:3077
BINDING SITE FOR RESIDUE SO4 R2064
19
CC1
SOFTWARE
TRP A:153 , TYR A:154 , ILE A:155 , TRP D:153 , TYR D:154 , ILE D:155
BINDING SITE FOR RESIDUE DIO A1183
20
CC2
SOFTWARE
TRP B:153 , TYR B:154 , ILE B:155 , TYR E:154 , ILE E:155
BINDING SITE FOR RESIDUE DIO B1183
21
CC3
SOFTWARE
TRP C:153 , TYR C:154 , ILE C:155 , TYR F:154 , ILE F:155
BINDING SITE FOR RESIDUE DIO F1183
22
CC4
SOFTWARE
ARG C:75 , PRO C:76 , GLU C:106 , ARG C:109 , HOH C:3179
BINDING SITE FOR RESIDUE EDO C1183
23
CC5
SOFTWARE
LYS B:36 , GLY B:163 , HOH B:3018 , GLN O:959 , HOH O:3076
BINDING SITE FOR RESIDUE EDO O2063
24
CC6
SOFTWARE
GLN E:86 , ASP E:118 , GLN E:176 , GLN E:180
BINDING SITE FOR RESIDUE EDO E1183
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2j59m1 (M:931-1063)
1b: SCOP_d2j59n_ (N:)
1c: SCOP_d2j59o_ (O:)
1d: SCOP_d2j59p_ (P:)
1e: SCOP_d2j59q_ (Q:)
1f: SCOP_d2j59r_ (R:)
2a: SCOP_d2j59a_ (A:)
2b: SCOP_d2j59b_ (B:)
2c: SCOP_d2j59c_ (C:)
2d: SCOP_d2j59d_ (D:)
2e: SCOP_d2j59e_ (E:)
2f: SCOP_d2j59f_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Rho GTPase-activating protein 21
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2j59m1
M:931-1063
1b
d2j59n_
N:
1c
d2j59o_
O:
1d
d2j59p_
P:
1e
d2j59q_
Q:
1f
d2j59r_
R:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Human (Homo sapiens), ARF1 [TaxId: 9606]
(12)
2a
d2j59a_
A:
2b
d2j59b_
B:
2c
d2j59c_
C:
2d
d2j59d_
D:
2e
d2j59e_
E:
2f
d2j59f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2j59A00 (A:16-180)
1b: CATH_2j59C00 (C:16-180)
1c: CATH_2j59D00 (D:16-180)
1d: CATH_2j59E00 (E:16-180)
1e: CATH_2j59F00 (F:16-180)
1f: CATH_2j59B00 (B:16-180)
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(
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Architectures
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(
)
Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Mouse (Mus musculus)
(17)
1a
2j59A00
A:16-180
1b
2j59C00
C:16-180
1c
2j59D00
D:16-180
1d
2j59E00
E:16-180
1e
2j59F00
F:16-180
1f
2j59B00
B:16-180
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein & NOT PROSITE
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Chain C
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Chain M
Chain N
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Chain Q
Chain R
Asymmetric Unit 1
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Asym.Unit (322 KB)
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Biol.Unit 3 (57 KB)
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