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2J4W
Asym. Unit
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Asym.Unit (85 KB)
Biol.Unit 1 (229 KB)
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(1)
Title
:
STRUCTURE OF A PLASMODIUM VIVAX APICAL MEMBRANE ANTIGEN 1-FAB F8.12.19 COMPLEX
Authors
:
S. Igonet, B. Vulliez-Le Normand, G. Faure, M. M. Riottot, C. H. M. Kocken, A. W. Thomas, G. A. Bentley
Date
:
07 Sep 06 (Deposition) - 30 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : D,H,L
Biol. Unit 1: D,H,L (3x)
Keywords
:
Immunoglobulin Domain, Immunoglobulin C Region, Membrane, Transmembrane, Hypothetical Protein, Antibody Cross- Reactivity, Surface Active Protein, Malaria Vaccine Candidate, Apical Membrane Antigen 1, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Igonet, B. Vulliez-Le Normand, G. Faure, M. M. Riottot, C. H. M. Kocken, A. W. Thomas, G. A. Bentley
Cross-Reactivity Studies Of An Anti-Plasmodium Vivax Apical Membrane Antigen 1 Monoclonal Antibody: Binding And Structural Characterisation.
J. Mol. Biol. V. 366 1523 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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All Hetero Components
1a: PYROGLUTAMIC ACID (PCAa)
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1
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d2j4wl1 (L:1-107)
2a: SCOP_d2j4wl2 (L:108-214)
3a: SCOP_d2j4wh2 (H:113-233)
4a: SCOP_d2j4wh1 (H:1-112)
5a: SCOP_d2j4wd1 (D:421-454)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d2j4wl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d2j4wl2
L:108-214
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
3a
d2j4wh2
H:113-233
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
(58)
4a
d2j4wh1
H:1-112
Class
:
Small proteins
(3458)
Fold
:
Apical membrane antigen 1
(3)
Superfamily
:
Apical membrane antigen 1
(3)
Family
:
Apical membrane antigen 1
(3)
Protein domain
:
Apical membrane antigen 1
(3)
Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
(3)
5a
d2j4wd1
D:421-454
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2j4wL02 (L:109-214)
1b: CATH_2j4wL01 (L:2-108)
1c: CATH_2j4wH02 (H:114-227)
1d: CATH_2j4wH01 (H:1-113)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Plasmodium vivax. Organism_taxid: 5855. Strain: sal i.
(1)
1a
2j4wL02
L:109-214
1b
2j4wL01
L:2-108
1c
2j4wH02
H:114-227
1d
2j4wH01
H:1-113
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Pfam Domains
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