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2J45
Asym. Unit
Info
Asym.Unit (577 KB)
Biol.Unit 1 (282 KB)
Biol.Unit 2 (292 KB)
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(1)
Title
:
WATER STRUCTURE OF T. AQUATICUS FFH NG DOMAIN AT 1.1A RESOLUTION
Authors
:
D. M. Freymann, U. D. Ramirez
Date
:
24 Aug 06 (Deposition) - 30 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.14
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ribonucleoprotein, Nucleotide-Binding, Srp, Ffh, Water, Gtpase, Rna-Binding, Gtp-Binding, Signal Recognition Particle, Nucleotide Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. D. Ramirez, D. M. Freymann
Analysis Of Protein Hydration In Ultra-High Resolution Structures Of The Srp Gtpase Ffh
Acta Crystallogr. , Sect. D V. 62 1520 2006
(for further references see the
PDB file header
)
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
5a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MRD
2
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:110 , THR A:112 , THR A:113 , MES A:1303 , HOH A:2238 , HOH A:2476
BINDING SITE FOR RESIDUE NA A1299
2
AC2
SOFTWARE
GLU A:46 , GLU A:207 , HOH A:2350 , GLU B:72 , HOH B:2156 , HOH B:2157
BINDING SITE FOR RESIDUE CA A1401
3
AC3
SOFTWARE
HOH A:2456 , HOH A:2459 , GLU B:46 , GLU B:207 , HOH B:2306 , HOH B:2307
BINDING SITE FOR RESIDUE CA B1401
4
AC4
SOFTWARE
LYS A:151 , PRO A:276 , HOH A:2249 , HOH A:2465
BINDING SITE FOR RESIDUE MRD A1300
5
AC5
SOFTWARE
ARG A:146 , VAL A:156 , LEU A:157 , GLU A:158 , HOH A:2467 , HOH A:2468 , HOH A:2469 , HOH A:2470 , HOH A:2471 , HOH A:2472 , ARG B:19
BINDING SITE FOR RESIDUE MES A1302
6
AC6
SOFTWARE
GLN A:107 , GLY A:108 , LYS A:111 , THR A:112 , ALA A:141 , GLN A:144 , GLY A:190 , NA A:1299 , HOH A:2186 , HOH A:2240 , HOH A:2473 , HOH A:2474 , HOH A:2475 , HOH A:2476 , HOH A:2477 , HOH A:2478
BINDING SITE FOR RESIDUE MES A1303
7
AC7
SOFTWARE
LEU B:247 , TYR B:283 , ARG B:286 , LEU B:287 , ARG B:290 , HOH B:2393 , HOH B:2394
BINDING SITE FOR RESIDUE MRD B1298
8
AC8
SOFTWARE
GLN B:107 , GLY B:108 , SER B:109 , GLY B:110 , LYS B:111 , THR B:112 , THR B:113 , GLN B:144 , HOH B:2195 , HOH B:2419
BINDING SITE FOR RESIDUE MES B1299
9
AC9
SOFTWARE
GLU A:285 , HOH A:2448 , ARG B:35 , ARG B:49 , VAL B:52 , HOH B:2128 , HOH B:2420 , HOH B:2422
BINDING SITE FOR RESIDUE EDO B1300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SRP54 (A:266-279,B:266-279)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
2
A:266-279
B:266-279
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2j45a1 (A:1-88)
1b: SCOP_d2j45b1 (B:1-88)
2a: SCOP_d2j45a2 (A:89-297)
2b: SCOP_d2j45b2 (B:89-297)
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Classes
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
1a
d2j45a1
A:1-88
1b
d2j45b1
B:1-88
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
2a
d2j45a2
A:89-297
2b
d2j45b2
B:89-297
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2j45A02 (A:91-281)
1b: CATH_2j45B02 (B:91-281)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271.
(14)
1a
2j45A02
A:91-281
1b
2j45B02
B:91-281
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (577 KB)
Header - Asym.Unit
Biol.Unit 1 (282 KB)
Header - Biol.Unit 1
Biol.Unit 2 (292 KB)
Header - Biol.Unit 2
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