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Getting 'Biological Unit' information from database.
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2J3U
Biol. Unit 1
Info
Asym.Unit (234 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
L-FICOLIN COMPLEXED TO GALACTOSE
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
23 Aug 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Lectin, Collagen, Immunology, Glycoprotein, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
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Hetero Components
(6, 13)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEc)
4a: ALPHA D-GALACTOSE (GLAa)
4b: ALPHA D-GALACTOSE (GLAb)
4c: ALPHA D-GALACTOSE (GLAc)
4d: ALPHA D-GALACTOSE (GLAd)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7a: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ca)
7b: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cb)
7c: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cc)
7d: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cd)
7e: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ce)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
4
GLA
2
Ligand/Ion
ALPHA D-GALACTOSE
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
P4C
2
Ligand/Ion
O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:222 , GLN B:223 , HOH B:2086 , ASP E:222 , GLN E:223 , HOH E:2040
BINDING SITE FOR RESIDUE GLA B1291
02
AC2
SOFTWARE
ASN B:215 , NAG B:1294 , HOH B:2089 , GLY C:260 , PHE C:262 , ASN C:275
BINDING SITE FOR RESIDUE NAG B1293
03
AC3
SOFTWARE
ACT B:407 , NAG B:1293 , MAN B:1295 , HOH B:2089 , PHE C:262 , THR E:229
BINDING SITE FOR RESIDUE NAG B1294
04
AC4
SOFTWARE
NAG B:1294 , PHE C:262 , ACT C:1291
BINDING SITE FOR RESIDUE MAN B1295
05
AC5
SOFTWARE
GLY B:142 , SER B:143 , SER C:91 , ASP C:109 , ASP C:111 , ARG C:122 , GLU C:282 , LYS C:284 , HOH C:2059
BINDING SITE FOR RESIDUE GLA C1290
06
AC6
SOFTWARE
ASN C:215
BINDING SITE FOR RESIDUE NAG C1293
07
BC4
SOFTWARE
ASP A:224 , ASP A:226 , ASN A:228 , GLY A:230
BINDING SITE FOR RESIDUE CA A1289
08
BC5
SOFTWARE
NAG B:1294
BINDING SITE FOR RESIDUE ACT B 407
09
BC6
SOFTWARE
CYS B:245 , HIS B:246 , TYR B:274 , HOH B:2064 , HOH B:2084
BINDING SITE FOR RESIDUE ACT B1290
10
BC7
SOFTWARE
ASP B:224 , ASP B:226 , ASN B:228 , GLY B:230 , HOH B:2055 , HOH B:2056
BINDING SITE FOR RESIDUE CA B1292
11
BC8
SOFTWARE
MAN B:1295 , CYS C:245 , HIS C:246 , PHE C:262
BINDING SITE FOR RESIDUE ACT C1291
12
BC9
SOFTWARE
ASP C:224 , ASP C:226 , ASN C:228 , GLY C:230
BINDING SITE FOR RESIDUE CA C1292
13
CC6
SOFTWARE
ARG B:132 , ASP B:133 , THR B:136 , LYS B:221 , HOH B:2081 , HOH B:2082 , HOH B:2083
BINDING SITE FOR RESIDUE EPE B1289
14
CC7
SOFTWARE
ASP A:125 , VAL B:124 , ASP B:125 , ASP B:172 , PHE B:173 , ASP B:175 , LYS B:279 , VAL B:280
BINDING SITE FOR RESIDUE P4C B1296
15
CC8
SOFTWARE
ARG C:132 , ASP C:133 , THR C:136 , LYS C:221 , SER E:261
BINDING SITE FOR RESIDUE EPE C1289
16
CC9
SOFTWARE
ASP B:125 , GLY B:126 , ARG B:256 , ASP C:175 , ASN C:176 , TYR C:177 , LYS C:279 , HOH C:2033 , GLU D:203
BINDING SITE FOR RESIDUE P4C C1294
17
DC4
SOFTWARE
GLU A:203 , ASP E:125 , GLY E:126 , SER E:127 , GLN E:161 , GLU F:174 , ASP F:175 , ASN F:176 , TYR F:177 , LYS F:279
BINDING SITE FOR RESIDUE P4C F1294
[
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SAPs(SNPs)/Variants
(4, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049072 (H88Y, chain A/B/C, )
2: VAR_049073 (G92S, chain A/B/C, )
3: VAR_049074 (T211M, chain A/B/C, )
4: VAR_049075 (A233S, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049072
H
113
Y
FCN2_HUMAN
Polymorphism
17549179
A/B/C
H
88
Y
2
UniProt
VAR_049073
G
117
S
FCN2_HUMAN
Polymorphism
12684476
A/B/C
G
92
S
3
UniProt
VAR_049074
T
236
M
FCN2_HUMAN
Polymorphism
17549193
A/B/C
T
211
M
4
UniProt
VAR_049075
A
258
S
FCN2_HUMAN
Polymorphism
7851696
A/B/C
A
233
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_2 (B:72-288)
2: FIBRINOGEN_C_1 (A:240-252,B:240-252,C:240-252)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FCN2_HUMAN
96-313
1
B:72-288
-
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN2_HUMAN
265-277
3
A:240-252
B:240-252
C:240-252
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2j3ua_ (A:)
1b: SCOP_d2j3ub_ (B:)
1c: SCOP_d2j3uc_ (C:)
1d: SCOP_d2j3ud_ (D:)
1e: SCOP_d2j3ue_ (E:)
1f: SCOP_d2j3uf_ (F:)
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)
(
)
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(
)
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)
(
)
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)
(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j3ua_
A:
1b
d2j3ub_
B:
1c
d2j3uc_
C:
1d
d2j3ud_
D:
1e
d2j3ue_
E:
1f
d2j3uf_
F:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2j3uB01 (B:71-206,B:280-288)
1b: CATH_2j3uE01 (E:71-206,E:280-288)
1c: CATH_2j3uA01 (A:72-206,A:280-288)
1d: CATH_2j3uF01 (F:72-206,F:280-288)
1e: CATH_2j3uD01 (D:73-206,D:280-288)
1f: CATH_2j3uC01 (C:75-206,C:280-288)
2a: CATH_2j3uA02 (A:207-279)
2b: CATH_2j3uB02 (B:207-279)
2c: CATH_2j3uC02 (C:207-279)
2d: CATH_2j3uD02 (D:207-279)
2e: CATH_2j3uE02 (E:207-279)
2f: CATH_2j3uF02 (F:207-279)
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Classes
(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j3uB01
B:71-206,B:280-288
1b
2j3uE01
E:71-206,E:280-288
1c
2j3uA01
A:72-206,A:280-288
1d
2j3uF01
F:72-206,F:280-288
1e
2j3uD01
D:73-206,D:280-288
1f
2j3uC01
C:75-206,C:280-288
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j3uA02
A:207-279
2b
2j3uB02
B:207-279
2c
2j3uC02
C:207-279
2d
2j3uD02
D:207-279
2e
2j3uE02
E:207-279
2f
2j3uF02
F:207-279
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (234 KB)
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