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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
2J3U
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
L-FICOLIN COMPLEXED TO GALACTOSE
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
23 Aug 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Lectin, Collagen, Immunology, Glycoprotein, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
[
close entry info
]
Hetero Components
(7, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEc)
4a: ALPHA D-GALACTOSE (GLAa)
4b: ALPHA D-GALACTOSE (GLAb)
4c: ALPHA D-GALACTOSE (GLAc)
4d: ALPHA D-GALACTOSE (GLAd)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7a: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ca)
7b: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cb)
7c: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cc)
7d: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cd)
7e: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ce)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CA
6
Ligand/Ion
CALCIUM ION
3
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
4
GLA
4
Ligand/Ion
ALPHA D-GALACTOSE
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
P4C
5
Ligand/Ion
O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:222 , GLN B:223 , HOH B:2086 , ASP E:222 , GLN E:223 , HOH E:2040
BINDING SITE FOR RESIDUE GLA B1291
02
AC2
SOFTWARE
ASN B:215 , NAG B:1294 , HOH B:2089 , GLY C:260 , PHE C:262 , ASN C:275
BINDING SITE FOR RESIDUE NAG B1293
03
AC3
SOFTWARE
ACT B:407 , NAG B:1293 , MAN B:1295 , HOH B:2089 , PHE C:262 , THR E:229
BINDING SITE FOR RESIDUE NAG B1294
04
AC4
SOFTWARE
NAG B:1294 , PHE C:262 , ACT C:1291
BINDING SITE FOR RESIDUE MAN B1295
05
AC5
SOFTWARE
GLY B:142 , SER B:143 , SER C:91 , ASP C:109 , ASP C:111 , ARG C:122 , GLU C:282 , LYS C:284 , HOH C:2059
BINDING SITE FOR RESIDUE GLA C1290
06
AC6
SOFTWARE
ASN C:215
BINDING SITE FOR RESIDUE NAG C1293
07
AC7
SOFTWARE
ARG E:132 , ASP E:133 , THR E:136 , LYS E:221 , HOH E:2015
BINDING SITE FOR RESIDUE GLA E1289
08
AC8
SOFTWARE
ASN E:215 , NAG E:1293 , HOH E:2063 , GLY F:260 , PHE F:262 , ASN F:275
BINDING SITE FOR RESIDUE NAG E1292
09
AC9
SOFTWARE
NAG E:1292 , MAN E:1294 , HOH E:2064 , PHE F:262
BINDING SITE FOR RESIDUE NAG E1293
10
BC1
SOFTWARE
NAG E:1293 , ASN F:244 , PHE F:262 , ACT F:1291
BINDING SITE FOR RESIDUE MAN E1294
11
BC2
SOFTWARE
SER E:143 , SER F:91 , ASP F:109 , ASP F:111 , THR F:112 , ARG F:122 , GLU F:282 , LYS F:284
BINDING SITE FOR RESIDUE GLA F1290
12
BC3
SOFTWARE
ASN F:215
BINDING SITE FOR RESIDUE NAG F1293
13
BC4
SOFTWARE
ASP A:224 , ASP A:226 , ASN A:228 , GLY A:230
BINDING SITE FOR RESIDUE CA A1289
14
BC5
SOFTWARE
NAG B:1294
BINDING SITE FOR RESIDUE ACT B 407
15
BC6
SOFTWARE
CYS B:245 , HIS B:246 , TYR B:274 , HOH B:2064 , HOH B:2084
BINDING SITE FOR RESIDUE ACT B1290
16
BC7
SOFTWARE
ASP B:224 , ASP B:226 , ASN B:228 , GLY B:230 , HOH B:2055 , HOH B:2056
BINDING SITE FOR RESIDUE CA B1292
17
BC8
SOFTWARE
MAN B:1295 , CYS C:245 , HIS C:246 , PHE C:262
BINDING SITE FOR RESIDUE ACT C1291
18
BC9
SOFTWARE
ASP C:224 , ASP C:226 , ASN C:228 , GLY C:230
BINDING SITE FOR RESIDUE CA C1292
19
CC1
SOFTWARE
ASP D:224 , ASP D:226 , ASN D:228 , GLY D:230
BINDING SITE FOR RESIDUE CA D1289
20
CC2
SOFTWARE
PHE E:236 , CYS E:245 , HIS E:246
BINDING SITE FOR RESIDUE ACT E1290
21
CC3
SOFTWARE
ASP E:224 , ASP E:226 , ASN E:228 , GLY E:230 , HOH E:2042 , HOH E:2046
BINDING SITE FOR RESIDUE CA E1291
22
CC4
SOFTWARE
MAN E:1294 , PHE F:236 , CYS F:245 , HIS F:246 , PHE F:262 , ALA F:263
BINDING SITE FOR RESIDUE ACT F1291
23
CC5
SOFTWARE
ASP F:224 , ASP F:226 , ASN F:228 , GLY F:230 , HOH F:2045
BINDING SITE FOR RESIDUE CA F1292
24
CC6
SOFTWARE
ARG B:132 , ASP B:133 , THR B:136 , LYS B:221 , HOH B:2081 , HOH B:2082 , HOH B:2083
BINDING SITE FOR RESIDUE EPE B1289
25
CC7
SOFTWARE
ASP A:125 , VAL B:124 , ASP B:125 , ASP B:172 , PHE B:173 , ASP B:175 , LYS B:279 , VAL B:280
BINDING SITE FOR RESIDUE P4C B1296
26
CC8
SOFTWARE
ARG C:132 , ASP C:133 , THR C:136 , LYS C:221 , SER E:261
BINDING SITE FOR RESIDUE EPE C1289
27
CC9
SOFTWARE
ASP B:125 , GLY B:126 , ARG B:256 , ASP C:175 , ASN C:176 , TYR C:177 , LYS C:279 , HOH C:2033 , GLU D:203
BINDING SITE FOR RESIDUE P4C C1294
28
DC1
SOFTWARE
ASP D:125 , SER D:127 , ARG D:256 , VAL E:124 , PHE E:173 , ASP E:175 , LYS E:279
BINDING SITE FOR RESIDUE P4C E1295
29
DC2
SOFTWARE
GLU E:174 , ASN E:176 , GLY E:257 , THR E:258 , GLY E:271 , LYS E:272 , TYR E:276 , HOH E:2054
BINDING SITE FOR RESIDUE P4C E1296
30
DC3
SOFTWARE
ARG F:132 , ASP F:133 , THR F:136 , LYS F:221
BINDING SITE FOR RESIDUE EPE F1289
31
DC4
SOFTWARE
GLU A:203 , ASP E:125 , GLY E:126 , SER E:127 , GLN E:161 , GLU F:174 , ASP F:175 , ASN F:176 , TYR F:177 , LYS F:279
BINDING SITE FOR RESIDUE P4C F1294
[
close Site info
]
SAPs(SNPs)/Variants
(4, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049072 (H88Y, chain A/B/C/D/E/F, )
2: VAR_049073 (G92S, chain A/B/C/D/E/F, )
3: VAR_049074 (T211M, chain A/B/C/D/E/F, )
4: VAR_049075 (A233S, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049072
H
113
Y
FCN2_HUMAN
Polymorphism
17549179
A/B/C/D/E/F
H
88
Y
2
UniProt
VAR_049073
G
117
S
FCN2_HUMAN
Polymorphism
12684476
A/B/C/D/E/F
G
92
S
3
UniProt
VAR_049074
T
236
M
FCN2_HUMAN
Polymorphism
17549193
A/B/C/D/E/F
T
211
M
4
UniProt
VAR_049075
A
258
S
FCN2_HUMAN
Polymorphism
7851696
A/B/C/D/E/F
A
233
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_2 (B:72-288,E:72-288)
2: FIBRINOGEN_C_1 (A:240-252,B:240-252,C:240-252,D:24...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FCN2_HUMAN
96-313
2
B:72-288
E:72-288
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN2_HUMAN
265-277
6
A:240-252
B:240-252
C:240-252
D:240-252
E:240-252
F:240-252
[
close PROSITE info
]
Exons
(5, 30)
Info
All Exons
Exon 1.4 (A:72-76 | B:71-76 | C:75-76 | D:73...)
Exon 1.5 (A:76-118 | B:76-118 | C:76-118 | D...)
Exon 1.6 (A:119-162 | B:119-162 | C:119-162 ...)
Exon 1.7 (A:162-207 | B:162-207 | C:162-207 ...)
Exon 1.8a (A:207-288 | B:207-288 | C:207-288 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8a
6: Boundary 1.8a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000291744
1b
ENSE00001890733
chr9:
137772658-137772767
110
FCN2_HUMAN
1-34
34
0
-
-
1.2
ENST00000291744
2
ENSE00001051605
chr9:
137774372-137774485
114
FCN2_HUMAN
34-72
39
0
-
-
1.3a
ENST00000291744
3a
ENSE00001051599
chr9:
137775148-137775201
54
FCN2_HUMAN
72-90
19
0
-
-
1.4
ENST00000291744
4
ENSE00001247525
chr9:
137776586-137776618
33
FCN2_HUMAN
90-101
12
6
A:72-76
B:71-76
C:75-76
D:73-76
E:71-76
F:72-76
5
6
2
4
6
5
1.5
ENST00000291744
5
ENSE00001643405
chr9:
137777085-137777212
128
FCN2_HUMAN
101-143
43
6
A:76-118
B:76-118
C:76-118
D:76-118
E:76-118
F:76-118
43
43
43
43
43
43
1.6
ENST00000291744
6
ENSE00001786911
chr9:
137777614-137777743
130
FCN2_HUMAN
144-187
44
6
A:119-162
B:119-162
C:119-162
D:119-162
E:119-162
F:119-162
44
44
44
44
44
44
1.7
ENST00000291744
7
ENSE00001656900
chr9:
137778276-137778410
135
FCN2_HUMAN
187-232
46
6
A:162-207
B:162-207
C:162-207
D:162-207
E:162-207
F:162-207
46
46
46
46
46
46
1.8a
ENST00000291744
8a
ENSE00001941356
chr9:
137779014-137779366
353
FCN2_HUMAN
232-313
82
6
A:207-288
B:207-288
C:207-288
D:207-288
E:207-288
F:207-288
82
82
82
82
82
82
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2j3ua_ (A:)
1b: SCOP_d2j3ub_ (B:)
1c: SCOP_d2j3uc_ (C:)
1d: SCOP_d2j3ud_ (D:)
1e: SCOP_d2j3ue_ (E:)
1f: SCOP_d2j3uf_ (F:)
View:
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j3ua_
A:
1b
d2j3ub_
B:
1c
d2j3uc_
C:
1d
d2j3ud_
D:
1e
d2j3ue_
E:
1f
d2j3uf_
F:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2j3uB01 (B:71-206,B:280-288)
1b: CATH_2j3uE01 (E:71-206,E:280-288)
1c: CATH_2j3uA01 (A:72-206,A:280-288)
1d: CATH_2j3uF01 (F:72-206,F:280-288)
1e: CATH_2j3uD01 (D:73-206,D:280-288)
1f: CATH_2j3uC01 (C:75-206,C:280-288)
2a: CATH_2j3uA02 (A:207-279)
2b: CATH_2j3uB02 (B:207-279)
2c: CATH_2j3uC02 (C:207-279)
2d: CATH_2j3uD02 (D:207-279)
2e: CATH_2j3uE02 (E:207-279)
2f: CATH_2j3uF02 (F:207-279)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j3uB01
B:71-206,B:280-288
1b
2j3uE01
E:71-206,E:280-288
1c
2j3uA01
A:72-206,A:280-288
1d
2j3uF01
F:72-206,F:280-288
1e
2j3uD01
D:73-206,D:280-288
1f
2j3uC01
C:75-206,C:280-288
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j3uA02
A:207-279
2b
2j3uB02
B:207-279
2c
2j3uC02
C:207-279
2d
2j3uD02
D:207-279
2e
2j3uE02
E:207-279
2f
2j3uF02
F:207-279
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (114 KB)
Header - Biol.Unit 1
Biol.Unit 2 (114 KB)
Header - Biol.Unit 2
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