PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2J3S
Biol. Unit 1
Info
Asym.Unit (84 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (37 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN FILAMIN A IG DOMAINS 19 TO 21
Authors
:
T. -R. Kiema, J. Ylanne
Date
:
23 Aug 06 (Deposition) - 16 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytoskeleton, Phosphorylation, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Lad, T. -R. Kiema, P. Jiang, O. T. Pentikanen, C. H. Coles, I. D. Campbell, D. A. Calderwood, J. Ylanne
Structure Of Three Tandem Filamin Domains Reveals Auto-Inhibition Of Ligand-Binding.
Embo J. V. 26 3993 2007
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
2a: 1,4-DIETHYLENE DIOXIDE (DIOa)
2b: 1,4-DIETHYLENE DIOXIDE (DIOb)
2c: 1,4-DIETHYLENE DIOXIDE (DIOc)
2d: 1,4-DIETHYLENE DIOXIDE (DIOd)
3a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
DIO
2
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
3
GOL
-1
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:2244 , GLY A:2245 , PHE A:2259
BINDING SITE FOR RESIDUE BR A3330
2
AC2
SOFTWARE
ARG A:2146 , ARG A:2148 , GLY A:2269 , GLY A:2270 , LEU A:2271 , PHE A:2311
BINDING SITE FOR RESIDUE DIO A3331
3
AC3
SOFTWARE
GLU A:2258 , SER A:2284 , GLU A:2286 , GLY A:2294 , ALA A:2296
BINDING SITE FOR RESIDUE DIO A3332
4
AC4
SOFTWARE
GLY A:2234 , THR B:2072
BINDING SITE FOR RESIDUE BR B3330
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: FILAMIN_REPEAT (A:2132-2230,A:2233-2325,A:2327-232...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FILAMIN_REPEAT
PS50194
Filamin/ABP280 repeat profile.
FLNA_HUMAN
276-374
376-474
475-570
571-663
667-763
764-866
867-965
966-1061
1062-1154
1155-1249
1250-1349
1350-1442
1443-1539
1540-1636
1649-1740
1779-1860
1860-1952
1950-2039
2042-2134
2132-2230
2233-2325
2327-2420
2424-2516
2552-2646
3
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:2132-2230
-
A:2233-2325
-
A:2327-2329
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2j3sa1 (A:2237-2326)
1b: SCOP_d2j3sa2 (A:2149-2236)
1c: SCOP_d2j3sb1 (B:2237-2326)
1d: SCOP_d2j3sb2 (B:2149-2236)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Filamin repeat (rod domain)
(36)
Protein domain
:
Filamin b
(18)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d2j3sa1
A:2237-2326
1b
d2j3sa2
A:2149-2236
1c
d2j3sb1
B:2237-2326
1d
d2j3sb2
B:2149-2236
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (84 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2J3S
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help