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2J3O
Biol. Unit 2
Info
Asym.Unit (223 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
L-FICOLIN COMPLEXED TO N-ACETYL-D-GLUCOSAMINE
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
22 Aug 06 (Deposition) - 23 Jan 07 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Sugar Binding Protein, Lectin, Collagen, Immunology, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC5 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
THR D:112 , ARG D:122 , GLU D:282 , LYS D:284 , HOH D:2019 , HOH D:2020 , SER F:127
BINDING SITE FOR RESIDUE NAG D1288
2
AC6
SOFTWARE
ASP D:125 , SER D:127 , SER D:143 , LEU D:145 , ASP E:109 , ARG E:122 , GLU E:282
BINDING SITE FOR RESIDUE NAG E1289
3
AC7
SOFTWARE
ASP E:125 , SER E:127 , SER E:143 , LEU E:145 , ARG F:122 , GLU F:282
BINDING SITE FOR RESIDUE NAG E1292
4
BC2
SOFTWARE
ASN B:244 , CYS B:245 , HIS B:246 , LEU E:74
BINDING SITE FOR RESIDUE ACT B1292
5
BC4
SOFTWARE
ASP D:224 , ASP D:226 , ASN D:228 , THR D:229 , GLY D:230
BINDING SITE FOR RESIDUE CA D1289
6
BC5
SOFTWARE
ASP E:224 , ASP E:226 , ASN E:228 , GLY E:230
BINDING SITE FOR RESIDUE CA E1290
7
BC6
SOFTWARE
ASP F:224 , ASP F:226 , ASN F:228 , GLY F:230
BINDING SITE FOR RESIDUE CA F1289
8
BC7
SOFTWARE
ASN E:215
BINDING SITE FOR MONO-SACCHARIDE NAG E1291 BOUND TO ASN E 215
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SAPs(SNPs)/Variants
(4, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049072 (H88Y, chain D/E/F, )
2: VAR_049073 (G92S, chain D/E/F, )
3: VAR_049074 (T211M, chain D/E/F, )
4: VAR_049075 (A233S, chain D/E/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049072
H
113
Y
FCN2_HUMAN
Polymorphism
17549179
D/E/F
H
88
Y
2
UniProt
VAR_049073
G
117
S
FCN2_HUMAN
Polymorphism
12684476
D/E/F
G
92
S
3
UniProt
VAR_049074
T
236
M
FCN2_HUMAN
Polymorphism
17549193
D/E/F
T
211
M
4
UniProt
VAR_049075
A
258
S
FCN2_HUMAN
Polymorphism
7851696
D/E/F
A
233
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
2: FIBRINOGEN_C_1 (D:240-252,E:240-252,F:240-252)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FCN2_HUMAN
96-313
0
-
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN2_HUMAN
265-277
3
-
-
-
D:240-252
E:240-252
F:240-252
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2j3oa_ (A:)
1b: SCOP_d2j3ob1 (B:72-288)
1c: SCOP_d2j3oc_ (C:)
1d: SCOP_d2j3od_ (D:)
1e: SCOP_d2j3oe_ (E:)
1f: SCOP_d2j3of_ (F:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j3oa_
A:
1b
d2j3ob1
B:72-288
1c
d2j3oc_
C:
1d
d2j3od_
D:
1e
d2j3oe_
E:
1f
d2j3of_
F:
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2j3oB01 (B:70-206,B:280-288)
1b: CATH_2j3oA01 (A:72-206,A:280-288)
1c: CATH_2j3oC01 (C:72-206,C:280-288)
1d: CATH_2j3oE01 (E:72-206,E:280-288)
1e: CATH_2j3oF01 (F:72-206,F:280-288)
1f: CATH_2j3oD01 (D:72-206,D:280-287)
2a: CATH_2j3oA02 (A:207-279)
2b: CATH_2j3oB02 (B:207-279)
2c: CATH_2j3oC02 (C:207-279)
2d: CATH_2j3oD02 (D:207-279)
2e: CATH_2j3oE02 (E:207-279)
2f: CATH_2j3oF02 (F:207-279)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j3oB01
B:70-206,B:280-288
1b
2j3oA01
A:72-206,A:280-288
1c
2j3oC01
C:72-206,C:280-288
1d
2j3oE01
E:72-206,E:280-288
1e
2j3oF01
F:72-206,F:280-288
1f
2j3oD01
D:72-206,D:280-287
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j3oA02
A:207-279
2b
2j3oB02
B:207-279
2c
2j3oC02
C:207-279
2d
2j3oD02
D:207-279
2e
2j3oE02
E:207-279
2f
2j3oF02
F:207-279
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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