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Getting 'Biological Unit' information from database.
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2J3G
Biol. Unit 1
Info
Asym.Unit (226 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
L-FICOLIN
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
21 Aug 06 (Deposition) - 23 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Lectin, Glycoprotein, Innate Immunity, Fibrinogen-Like Domain, Collagen, Immunology, Lectin-Like, Pattern- Recognition-Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: ALPHA-L-FUCOSE (FUCa)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ca)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
P4C
-1
Ligand/Ion
O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:215 , NAG B:1291 , FUC B:1292 , HOH B:2055 , HOH B:2056 , GLY C:260 , ASN C:275
BINDING SITE FOR RESIDUE NAG B1290
2
AC2
SOFTWARE
NAG B:1290 , BMA B:1293 , MAN B:1294 , HOH B:2058 , PHE C:262
BINDING SITE FOR RESIDUE NAG B1291
3
AC3
SOFTWARE
ASN B:215 , GLN B:216 , SER B:217 , NAG B:1290 , HOH B:2056 , HOH B:2059 , GLY C:260
BINDING SITE FOR RESIDUE FUC B1292
4
AC4
SOFTWARE
NAG B:1291 , MAN B:1294
BINDING SITE FOR RESIDUE BMA B1293
5
AC5
SOFTWARE
NAG B:1291 , BMA B:1293 , HOH B:2060 , MET C:235 , PHE C:236 , HOH C:2039 , ASN E:244
BINDING SITE FOR RESIDUE MAN B1294
6
AC9
SOFTWARE
ASP A:224 , ASP A:226 , ASN A:228 , THR A:229 , GLY A:230 , HOH A:2017
BINDING SITE FOR RESIDUE CA A1289
7
BC1
SOFTWARE
ASP B:224 , ASP B:226 , ASN B:228 , GLY B:230
BINDING SITE FOR RESIDUE CA B1289
8
BC2
SOFTWARE
ASP C:224 , ASP C:226 , ASN C:228 , GLY C:230 , HOH C:2037
BINDING SITE FOR RESIDUE CA C1289
[
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SAPs(SNPs)/Variants
(4, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049072 (H88Y, chain A/B/C, )
2: VAR_049073 (G92S, chain A/B/C, )
3: VAR_049074 (T211M, chain A/B/C, )
4: VAR_049075 (A233S, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049072
H
113
Y
FCN2_HUMAN
Polymorphism
17549179
A/B/C
H
88
Y
2
UniProt
VAR_049073
G
117
S
FCN2_HUMAN
Polymorphism
12684476
A/B/C
G
92
S
3
UniProt
VAR_049074
T
236
M
FCN2_HUMAN
Polymorphism
17549193
A/B/C
T
211
M
4
UniProt
VAR_049075
A
258
S
FCN2_HUMAN
Polymorphism
7851696
A/B/C
A
233
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
2: FIBRINOGEN_C_1 (A:240-252,B:240-252,C:240-252)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FCN2_HUMAN
96-313
0
-
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN2_HUMAN
265-277
3
A:240-252
B:240-252
C:240-252
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2j3ga_ (A:)
1b: SCOP_d2j3gb_ (B:)
1c: SCOP_d2j3gc_ (C:)
1d: SCOP_d2j3gd_ (D:)
1e: SCOP_d2j3ge_ (E:)
1f: SCOP_d2j3gf_ (F:)
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(
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j3ga_
A:
1b
d2j3gb_
B:
1c
d2j3gc_
C:
1d
d2j3gd_
D:
1e
d2j3ge_
E:
1f
d2j3gf_
F:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2j3gE01 (E:71-206,E:280-288)
1b: CATH_2j3gB01 (B:72-206,B:280-288)
1c: CATH_2j3gD01 (D:72-206,D:280-288)
1d: CATH_2j3gF01 (F:75-206,F:280-288)
1e: CATH_2j3gA01 (A:76-206,A:280-288)
1f: CATH_2j3gC01 (C:76-206,C:280-288)
2a: CATH_2j3gA02 (A:207-279)
2b: CATH_2j3gB02 (B:207-279)
2c: CATH_2j3gC02 (C:207-279)
2d: CATH_2j3gD02 (D:207-279)
2e: CATH_2j3gE02 (E:207-279)
2f: CATH_2j3gF02 (F:207-279)
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Classes
(
)
(
)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j3gE01
E:71-206,E:280-288
1b
2j3gB01
B:72-206,B:280-288
1c
2j3gD01
D:72-206,D:280-288
1d
2j3gF01
F:75-206,F:280-288
1e
2j3gA01
A:76-206,A:280-288
1f
2j3gC01
C:76-206,C:280-288
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j3gA02
A:207-279
2b
2j3gB02
B:207-279
2c
2j3gC02
C:207-279
2d
2j3gD02
D:207-279
2e
2j3gE02
E:207-279
2f
2j3gF02
F:207-279
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (226 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
Biol.Unit 2 (111 KB)
Header - Biol.Unit 2
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