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2J37
Asym. Unit
Info
Asym.Unit (293 KB)
Biol.Unit 1 (289 KB)
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(1)
Title
:
MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Authors
:
M. Halic, M. Blau, T. Becker, T. Mielke, M. R. Pool, K. Wild, I. Sinning, R. Beckmann
Date
:
18 Aug 06 (Deposition) - 08 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.00
Chains
:
Asym. Unit : A,B,S,W,Z,4,5,6
Biol. Unit 1: A,B,S,W,Z,4,5,6 (1x)
Keywords
:
Ribosome, Srp, Translation/Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Halic, M. Blau, T. Becker, T. Mielke, M. R. Pool, K. Wild, I. Sinning, R. Beckmann
Following The Signal Sequence From Ribosomal Tunnel Exit To Signal Recognition Particle
Nature V. 444 508 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SRP54 (W:269-282)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_CANLF
269-282
1
W:269-282
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Exons
(15, 15)
Info
All Exons
Exon 1.2 (W:8-26)
Exon 1.3 (W:27-57)
Exon 1.4 (W:57-85)
Exon 1.5 (W:86-120 (gaps))
Exon 1.6 (W:121-143)
Exon 1.7 (W:143-162)
Exon 1.8 (W:162-212)
Exon 1.9 (W:213-262)
Exon 1.10 (W:262-296)
Exon 1.11 (W:296-325)
Exon 1.12 (W:325-349)
Exon 1.13 (W:350-386)
Exon 1.14 (W:386-443)
Exon 1.15 (W:443-475)
Exon 1.16 (W:475-488)
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16
16: Boundary 1.16/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSCAFT00000021158
1
ENSCAFE00000266960
chr8:
16804997-16805221
225
SRP54_CANLF
-
0
0
-
-
1.2
ENSCAFT00000021158
2
ENSCAFE00000145953
chr8:
16814262-16814372
111
SRP54_CANLF
1-26
26
1
W:8-26
19
1.3
ENSCAFT00000021158
3
ENSCAFE00000145956
chr8:
16817352-16817443
92
SRP54_CANLF
27-57
31
1
W:27-57
31
1.4
ENSCAFT00000021158
4
ENSCAFE00000145958
chr8:
16818374-16818458
85
SRP54_CANLF
57-85
29
1
W:57-85
29
1.5
ENSCAFT00000021158
5
ENSCAFE00000145962
chr8:
16822173-16822277
105
SRP54_CANLF
86-120
35
1
W:86-120 (gaps)
35
1.6
ENSCAFT00000021158
6
ENSCAFE00000145965
chr8:
16823939-16824005
67
SRP54_CANLF
121-143
23
1
W:121-143
23
1.7
ENSCAFT00000021158
7
ENSCAFE00000145970
chr8:
16824084-16824141
58
SRP54_CANLF
143-162
20
1
W:143-162
20
1.8
ENSCAFT00000021158
8
ENSCAFE00000145972
chr8:
16828069-16828219
151
SRP54_CANLF
162-212
51
1
W:162-212
51
1.9
ENSCAFT00000021158
9
ENSCAFE00000145975
chr8:
16829294-16829442
149
SRP54_CANLF
213-262
50
1
W:213-262
50
1.10
ENSCAFT00000021158
10
ENSCAFE00000145978
chr8:
16829968-16830068
101
SRP54_CANLF
262-296
35
1
W:262-296
35
1.11
ENSCAFT00000021158
11
ENSCAFE00000145980
chr8:
16830575-16830661
87
SRP54_CANLF
296-325
30
1
W:296-325
30
1.12
ENSCAFT00000021158
12
ENSCAFE00000145984
chr8:
16834396-16834469
74
SRP54_CANLF
325-349
25
1
W:325-349
25
1.13
ENSCAFT00000021158
13
ENSCAFE00000145988
chr8:
16834685-16834793
109
SRP54_CANLF
350-386
37
1
W:350-386
37
1.14
ENSCAFT00000021158
14
ENSCAFE00000145990
chr8:
16837205-16837375
171
SRP54_CANLF
386-443
58
1
W:386-443
58
1.15
ENSCAFT00000021158
15
ENSCAFE00000145993
chr8:
16840657-16840752
96
SRP54_CANLF
443-475
33
1
W:443-475
33
1.16
ENSCAFT00000021158
16
ENSCAFE00000145997
chr8:
16841630-16841721
92
SRP54_CANLF
475-504
30
1
W:475-488
14
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2j37b1 (B:14-118)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SRP19
(11)
Superfamily
:
SRP19
(11)
Family
:
SRP19
(9)
Protein domain
:
SRP19
(9)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2j37b1
B:14-118
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CATH Domains
(0, 0)
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Pfam Domains
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Chain 4
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Chain 6
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (293 KB)
Header - Asym.Unit
Biol.Unit 1 (289 KB)
Header - Biol.Unit 1
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