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2J1N
Asym. Unit
Info
Asym.Unit (183 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
OSMOPORIN OMPC
Authors
:
A. Basle, P. Storici, G. Rummel, J. P. Rosenbusch, T. Schirmer
Date
:
15 Aug 06 (Deposition) - 06 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Transport Protein, Beta-Barrel, Ion Transport, Osmoporin
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Basle, G. Rummel, P. Storici, J. P. Rosenbusch, T. Schirmer
Crystal Structure Of Osmoporin Ompc From E. Coli At 2. 0 A.
J. Mol. Biol. V. 362 933 2006
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: DODECANE (D12a)
2b: DODECANE (D12b)
2c: DODECANE (D12c)
2d: DODECANE (D12d)
2e: DODECANE (D12e)
2f: DODECANE (D12f)
2g: DODECANE (D12g)
2h: DODECANE (D12h)
2i: DODECANE (D12i)
2j: DODECANE (D12j)
2k: DODECANE (D12k)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
D12
11
Ligand/Ion
DODECANE
3
MG
3
Ligand/Ion
MAGNESIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:319 , LEU A:321 , THR A:334 , HOH A:2140 , HOH A:2148
BINDING SITE FOR RESIDUE MG A1347
02
AC2
SOFTWARE
ASN B:319 , LEU B:321 , THR B:334 , HOH B:2191 , HOH B:2194
BINDING SITE FOR RESIDUE MG B1347
03
AC3
SOFTWARE
THR B:47 , ASP B:48 , THR C:47 , ASP C:48
BINDING SITE FOR RESIDUE CL B1348
04
AC4
SOFTWARE
ASN A:69 , ASN B:69 , ASN C:69
BINDING SITE FOR RESIDUE CL B1349
05
AC5
SOFTWARE
ASN C:319 , LEU C:321 , THR C:334 , HOH C:2189 , HOH C:2191 , HOH C:2202
BINDING SITE FOR RESIDUE MG C1347
06
AC6
SOFTWARE
VAL B:338 , TYR C:277 , GLN C:279 , D12 C:1350
BINDING SITE FOR RESIDUE D12 C1348
07
AC7
SOFTWARE
TYR A:131 , GLY C:194 , GLY C:223 , GLY C:224
BINDING SITE FOR RESIDUE D12 C1349
08
AC8
SOFTWARE
LEU B:340 , PHE C:259 , D12 C:1348
BINDING SITE FOR RESIDUE D12 C1350
09
AC9
SOFTWARE
TYR A:149 , ILE C:197 , THR C:222
BINDING SITE FOR RESIDUE D12 C1351
10
BC1
SOFTWARE
LYS C:226 , TYR C:227 , VAL C:262 , ALA C:276 , TYR C:277
BINDING SITE FOR RESIDUE D12 C1352
11
BC2
SOFTWARE
TYR C:94 , HOH C:2027
BINDING SITE FOR RESIDUE D12 C1353
12
BC3
SOFTWARE
PHE C:23 , ASN C:336 , ILE C:337 , VAL C:338
BINDING SITE FOR RESIDUE D12 C1354
13
BC4
SOFTWARE
ARG A:132
BINDING SITE FOR RESIDUE D12 C1357
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: GRAM_NEG_PORIN (A:298-314,B:298-314,C:298-314)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GRAM_NEG_PORIN
PS00576
General diffusion Gram-negative porins signature.
OMPC_ECOLI
319-335
3
A:298-314
B:298-314
C:298-314
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2j1na_ (A:)
1b: SCOP_d2j1nb_ (B:)
1c: SCOP_d2j1nc_ (C:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Porin
(49)
Protein domain
:
automated matches
(9)
Escherichia coli [TaxId: 562]
(6)
1a
d2j1na_
A:
1b
d2j1nb_
B:
1c
d2j1nc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2j1nA00 (A:1-346)
1b: CATH_2j1nB00 (B:1-346)
1c: CATH_2j1nC00 (C:1-346)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Porin
(92)
Homologous Superfamily
:
Porin
(47)
Escherichia coli. Organism_taxid: 562. Strain: bzb1107.
(1)
1a
2j1nA00
A:1-346
1b
2j1nB00
B:1-346
1c
2j1nC00
C:1-346
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (183 KB)
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