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2J1K
Asym. Unit
Info
Asym.Unit (609 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (155 KB)
Biol.Unit 3 (157 KB)
Biol.Unit 4 (155 KB)
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(1)
Title
:
CAV-2 FIBRE HEAD IN COMPLEX WITH CAR D1
Authors
:
E. Seiradake, H. Lortat-Jacob, O. Billet, E. J. Kremer, S. Cusack
Date
:
14 Aug 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,X,Y,Z
Biol. Unit 1: C,H,I,J,P,T (1x)
Biol. Unit 2: B,D,E,F,K,O (1x)
Biol. Unit 3: L,M,N,V,X,Y (1x)
Biol. Unit 4: A,G,Q,R,S,Z (1x)
Keywords
:
Virus-Receptor Complex, Complex, Membrane, Receptor, Palmitate, Domain D1, Immunoglobulin Domain, Host-Virus Interaction, Glycoprotein, Fiber Protein, Cell Adhesion, Phosphorylation, Virus/Receptor Complex, Transmembrane, Tight Junction, Coxsackievirus, Fiber Head, Adenovirus, Fibre Head, Lipoprotein, Car, Knob, Fiber, Fibre, Cav-2, Canine
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Seiradake, H. Lortat-Jacob, O. Billet, E. J. Kremer, S. Cusack
Structural And Mutational Analysis Of Human Ad37 And Canine Adenovirus 2 Fiber Heads In Complex With The D1 Domain Of Coxsackie And Adenovirus Receptor.
J. Biol. Chem. V. 281 33704 2006
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(3, 29)
Info
All Exons
Exon 1.4b (A:19-70 | B:17-70 (gaps) | G:17-70...)
Exon 1.5 (A:71-135 | B:71-138 (gaps) | G:71-...)
Exon 1.6 (- | - | G:139-139 | J:139-139 | - ...)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284878
1a
ENSE00001356018
chr21:
18884700-18885490
791
CXAR_HUMAN
1-15
15
0
-
-
1.4b
ENST00000284878
4b
ENSE00001370254
chr21:
18919345-18919511
167
CXAR_HUMAN
15-70
56
12
A:19-70
B:17-70 (gaps)
G:17-70
J:17-70
K:16-70
O:19-70 (gaps)
P:17-70
T:19-70
V:17-70
X:17-70
Y:19-70
Z:19-70
52
54
54
54
55
52
54
52
54
54
52
52
1.5
ENST00000284878
5
ENSE00001016957
chr21:
18924067-18924271
205
CXAR_HUMAN
71-139
69
12
A:71-135
B:71-138 (gaps)
G:71-139
J:71-139
K:71-138
O:71-139
P:71-139
T:71-137
V:71-137
X:71-139
Y:71-137
Z:71-135
65
68
69
69
68
69
69
67
67
69
67
65
1.6
ENST00000284878
6
ENSE00001016954
chr21:
18931294-18931449
156
CXAR_HUMAN
139-191
53
5
-
-
G:139-139
J:139-139
-
O:139-139
P:139-139
-
-
X:139-139
-
-
-
-
1
1
-
1
1
-
-
1
-
-
1.7
ENST00000284878
7
ENSE00001016953
chr21:
18933020-18933142
123
CXAR_HUMAN
191-232
42
0
-
-
1.8
ENST00000284878
8
ENSE00001016956
chr21:
18933656-18933794
139
CXAR_HUMAN
232-278
47
0
-
-
1.9f
ENST00000284878
9f
ENSE00001918181
chr21:
18937746-18942418
4673
CXAR_HUMAN
278-365
88
0
-
-
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SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2j1ka_ (A:)
1b: SCOP_d2j1kb_ (B:)
1c: SCOP_d2j1kg_ (G:)
1d: SCOP_d2j1kj_ (J:)
1e: SCOP_d2j1kk_ (K:)
1f: SCOP_d2j1ko_ (O:)
1g: SCOP_d2j1kp_ (P:)
1h: SCOP_d2j1kt_ (T:)
1i: SCOP_d2j1kv_ (V:)
1j: SCOP_d2j1kx_ (X:)
1k: SCOP_d2j1ky_ (Y:)
1l: SCOP_d2j1kz_ (Z:)
2a: SCOP_d2j1kc1 (C:361-542)
3a: SCOP_d2j1kd_ (D:)
3b: SCOP_d2j1ki_ (I:)
3c: SCOP_d2j1kl_ (L:)
3d: SCOP_d2j1km_ (M:)
3e: SCOP_d2j1kn_ (N:)
3f: SCOP_d2j1kq_ (Q:)
3g: SCOP_d2j1kr_ (R:)
3h: SCOP_d2j1ks_ (S:)
3i: SCOP_d2j1ke_ (E:)
3j: SCOP_d2j1kf_ (F:)
3k: SCOP_d2j1kh_ (H:)
View:
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Classes
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)
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)
Folds
(
)
(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Human (Homo sapiens) [TaxId: 9606]
(85)
1a
d2j1ka_
A:
1b
d2j1kb_
B:
1c
d2j1kg_
G:
1d
d2j1kj_
J:
1e
d2j1kk_
K:
1f
d2j1ko_
O:
1g
d2j1kp_
P:
1h
d2j1kt_
T:
1i
d2j1kv_
V:
1j
d2j1kx_
X:
1k
d2j1ky_
Y:
1l
d2j1kz_
Z:
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Adenovirus fiber protein knob domain
(27)
Protein domain
:
Adenovirus fiber protein knob domain
(14)
Canine adenovirus 2 [TaxId: 10514]
(1)
2a
d2j1kc1
C:361-542
Protein domain
:
automated matches
(13)
Canine adenovirus 2 [TaxId: 10514]
(3)
3a
d2j1kd_
D:
3b
d2j1ki_
I:
3c
d2j1kl_
L:
3d
d2j1km_
M:
3e
d2j1kn_
N:
3f
d2j1kq_
Q:
3g
d2j1kr_
R:
3h
d2j1ks_
S:
3i
d2j1ke_
E:
3j
d2j1kf_
F:
3k
d2j1kh_
H:
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2j1kB00 (B:17-138)
1b: CATH_2j1kA00 (A:19-135)
1c: CATH_2j1kP00 (P:17-139)
1d: CATH_2j1kX00 (X:17-139)
1e: CATH_2j1kZ00 (Z:19-135)
1f: CATH_2j1kO00 (O:19-139)
1g: CATH_2j1kT00 (T:19-137)
1h: CATH_2j1kY00 (Y:19-137)
1i: CATH_2j1kV00 (V:17-137)
1j: CATH_2j1kG00 (G:17-139)
1k: CATH_2j1kJ00 (J:17-139)
1l: CATH_2j1kK00 (K:16-138)
View:
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Canine adenovirus 2. Organism_taxid: 10514.
(2)
1a
2j1kB00
B:17-138
1b
2j1kA00
A:19-135
1c
2j1kP00
P:17-139
1d
2j1kX00
X:17-139
1e
2j1kZ00
Z:19-135
1f
2j1kO00
O:19-139
1g
2j1kT00
T:19-137
1h
2j1kY00
Y:19-137
1i
2j1kV00
V:17-137
1j
2j1kG00
G:17-139
1k
2j1kJ00
J:17-139
1l
2j1kK00
K:16-138
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Pfam Domains
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Chain D
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Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
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Chain R
Chain S
Chain T
Chain V
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