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2J0T
Biol. Unit 3
Info
Asym.Unit (140 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-1 IN COMPLEX WITH THE INHIBITORY DOMAIN OF TIMP-1
Authors
:
S. Iyer, S. Wei, K. Brew, K. R. Acharya
Date
:
04 Aug 06 (Deposition) - 18 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Extracellular Matrix, Erythrocyte Maturation, Autocatalytic Cleavage, Collagen Degradation, Hydrolase,
(Keyword Search:
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)
Reference
:
S. Iyer, S. Wei, K. Brew, K. R. Acharya
Crystal Structure Of The Catalytic Domain Of Matrix Metalloproteinase-1 In Complex With The Inhibitory Domain Of Tissue Inhibitor Of Metalloproteinase-1.
J. Biol. Chem. V. 282 364 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
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Sites
(5, 5)
Info
All Sites
1: BC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC2
SOFTWARE
HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196
BINDING SITE FOR RESIDUE ZN C1264
2
BC3
SOFTWARE
HIS C:218 , HIS C:222 , HIS C:228 , CYS F:1
BINDING SITE FOR RESIDUE ZN C1265
3
BC4
SOFTWARE
ASP C:158 , GLY C:190 , GLY C:192 , ASP C:194
BINDING SITE FOR RESIDUE CA C1266
4
BC5
SOFTWARE
ASP C:175 , GLY C:176 , GLY C:178 , ASN C:180 , ASP C:198 , GLU C:201
BINDING SITE FOR RESIDUE CA C1267
5
BC6
SOFTWARE
ASP C:124 , GLU C:199 , GLU C:201
BINDING SITE FOR RESIDUE CA C1268
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_021024 (I191V, chain C, )
2: VAR_011970 (D252G, chain C, )
3: VAR_054005 (R262S, chain C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021024
I
191
V
MMP1_HUMAN
Polymorphism
17879973
C
I
191
V
2
UniProt
VAR_011970
D
252
G
MMP1_HUMAN
Polymorphism
513964
C
D
252
G
3
UniProt
VAR_054005
R
262
S
MMP1_HUMAN
Polymorphism
12282811
C
R
262
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NTR (F:1-124)
2: TIMP (F:1-13)
3: ZINC_PROTEASE (C:215-224)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTR
PS50189
NTR domain profile.
TIMP1_HUMAN
24-147
1
-
-
F:1-124
2
TIMP
PS00288
Tissue inhibitors of metalloproteinases signature.
TIMP1_HUMAN
24-36
1
-
-
F:1-13
3
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP1_HUMAN
215-224
1
-
-
C:215-224
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2j0td_ (D:)
1b: SCOP_d2j0te_ (E:)
1c: SCOP_d2j0tf_ (F:)
2a: SCOP_d2j0ta_ (A:)
2b: SCOP_d2j0tb_ (B:)
2c: SCOP_d2j0tc_ (C:)
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Classes
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Tissue inhibitor of metalloproteinases, TIMP
(13)
Protein domain
:
TIMP-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2j0td_
D:
1b
d2j0te_
E:
1c
d2j0tf_
F:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Fibroblast collagenase (MMP-1)
(14)
Human (Homo sapiens) [TaxId: 9606]
(13)
2a
d2j0ta_
A:
2b
d2j0tb_
B:
2c
d2j0tc_
C:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2j0tB00 (B:105-266)
1b: CATH_2j0tA00 (A:105-265)
1c: CATH_2j0tC00 (C:105-263)
2a: CATH_2j0tD00 (D:1-124)
2b: CATH_2j0tE00 (E:1-124)
2c: CATH_2j0tF00 (F:1-124)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
2j0tB00
B:105-266
1b
2j0tA00
A:105-265
1c
2j0tC00
C:105-263
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.120, no name defined]
(16)
Human (Homo sapiens)
(12)
2a
2j0tD00
D:1-124
2b
2j0tE00
E:1-124
2c
2j0tF00
F:1-124
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (45 KB)
Header - Biol.Unit 3
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