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2J0H
Biol. Unit 2
Info
Asym.Unit (222 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
L-FICOLIN COMPLEXED TO ACETYL-CHOLINE
Authors
:
V. Garlatti, C. Gaboriaud
Date
:
03 Aug 06 (Deposition) - 23 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Glycoprotein, Ficrinogen-Like, Innate Immunity, Pattern Recognition Protein, Lectin, Collagen, Immunology, Lectin- Like
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETYLCHOLINE (ACHa)
1b: ACETYLCHOLINE (ACHb)
1c: ACETYLCHOLINE (ACHc)
1d: ACETYLCHOLINE (ACHd)
1e: ACETYLCHOLINE (ACHe)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACH
2
Ligand/Ion
ACETYLCHOLINE
2
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASN E:215 , NAG E:1292 , GLY F:260 , PHE F:262 , ASN F:275
BINDING SITE FOR RESIDUE NAG E1291
2
AC5
SOFTWARE
NAG E:1291 , HOH E:2013 , PHE F:262
BINDING SITE FOR RESIDUE NAG E1292
3
AC9
SOFTWARE
ASP D:224 , ASP D:226 , ASN D:228 , THR D:229 , GLY D:230
BINDING SITE FOR RESIDUE CA D1289
4
BC1
SOFTWARE
ASP E:224 , ASP E:226 , ASN E:228 , GLY E:230
BINDING SITE FOR RESIDUE CA E1290
5
BC2
SOFTWARE
ASP F:224 , ASP F:226 , ASN F:228 , GLY F:230
BINDING SITE FOR RESIDUE CA F1290
6
BC6
SOFTWARE
ARG E:132 , ASP E:133 , THR E:136 , LYS E:221
BINDING SITE FOR RESIDUE ACH E1289
7
BC7
SOFTWARE
ARG F:132 , ASP F:133 , THR F:136 , LYS F:221 , HOH F:2016
BINDING SITE FOR RESIDUE ACH F1289
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SAPs(SNPs)/Variants
(4, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049072 (H88Y, chain D/E/F, )
2: VAR_049073 (G92S, chain D/E/F, )
3: VAR_049074 (T211M, chain D/E/F, )
4: VAR_049075 (A233S, chain D/E/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049072
H
113
Y
FCN2_HUMAN
Polymorphism
17549179
D/E/F
H
88
Y
2
UniProt
VAR_049073
G
117
S
FCN2_HUMAN
Polymorphism
12684476
D/E/F
G
92
S
3
UniProt
VAR_049074
T
236
M
FCN2_HUMAN
Polymorphism
17549193
D/E/F
T
211
M
4
UniProt
VAR_049075
A
258
S
FCN2_HUMAN
Polymorphism
7851696
D/E/F
A
233
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_2 (E:72-288)
2: FIBRINOGEN_C_1 (D:240-252,E:240-252,F:240-252)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FCN2_HUMAN
96-313
1
E:72-288
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FCN2_HUMAN
265-277
3
-
-
-
D:240-252
E:240-252
F:240-252
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2j0ha_ (A:)
1b: SCOP_d2j0hb_ (B:)
1c: SCOP_d2j0hc_ (C:)
1d: SCOP_d2j0hd_ (D:)
1e: SCOP_d2j0he_ (E:)
1f: SCOP_d2j0hf_ (F:)
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(
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2j0ha_
A:
1b
d2j0hb_
B:
1c
d2j0hc_
C:
1d
d2j0hd_
D:
1e
d2j0he_
E:
1f
d2j0hf_
F:
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2j0hE01 (E:71-206,E:280-288)
1b: CATH_2j0hB01 (B:72-206,B:280-288)
1c: CATH_2j0hC01 (C:73-206,C:280-288)
1d: CATH_2j0hA01 (A:75-206,A:280-288)
1e: CATH_2j0hD01 (D:75-206,D:280-288)
1f: CATH_2j0hF01 (F:77-206,F:280-288)
2a: CATH_2j0hA02 (A:207-279)
2b: CATH_2j0hB02 (B:207-279)
2c: CATH_2j0hC02 (C:207-279)
2d: CATH_2j0hD02 (D:207-279)
2e: CATH_2j0hE02 (E:207-279)
2f: CATH_2j0hF02 (F:207-279)
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(
)
(
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
2j0hE01
E:71-206,E:280-288
1b
2j0hB01
B:72-206,B:280-288
1c
2j0hC01
C:73-206,C:280-288
1d
2j0hA01
A:75-206,A:280-288
1e
2j0hD01
D:75-206,D:280-288
1f
2j0hF01
F:77-206,F:280-288
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
2j0hA02
A:207-279
2b
2j0hB02
B:207-279
2c
2j0hC02
C:207-279
2d
2j0hD02
D:207-279
2e
2j0hE02
E:207-279
2f
2j0hF02
F:207-279
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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