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2IYY
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
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(1)
Title
:
SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH SHIKIMATE-3-PHOSPHATE AND SO4
Authors
:
M. D. Hartmann, G. P. Bourenkov, A. Oberschall, N. Strizhov, H. D. Bartunik
Date
:
22 Jul 06 (Deposition) - 11 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Aromatic Amino Acid Biosynthesis, Kinase, Magnesium, P-Loop Kinase, Metal-Binding, Shikimate Kinase, Shikimate Pathway, Nucleotide-Binding, Amino-Acid Biosynthesis, Atp-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Hartmann, G. P. Bourenkov, A. Oberschall, N. Strizhov, H. D. Bartunik
Mechanism Of Phosphoryl Transfer Catalyzed By Shikimate Kinase From Mycobacterium Tuberculosis.
J. Mol. Biol. V. 364 411 2006
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: PHOSPHATE ION (PO4a)
4a: SHIKIMATE-3-PHOSPHATE (S3Pa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
S3P
1
Ligand/Ion
SHIKIMATE-3-PHOSPHATE
5
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:10 , PRO A:11 , GLY A:12 , SER A:13 , GLY A:14 , LYS A:15 , SER A:16 , PO4 A:204 , HOH A:2020 , HOH A:2229 , HOH A:2230 , HOH A:2231 , HOH A:2232 , HOH A:2233
BINDING SITE FOR RESIDUE SO4 A 202
02
AC2
SOFTWARE
PRO A:11 , LYS A:15 , ASP A:34 , GLY A:80 , S3P A:201 , SO4 A:202 , HOH A:2233 , HOH A:2234 , HOH A:2235
BINDING SITE FOR RESIDUE PO4 A 204
03
AC3
SOFTWARE
THR A:17 , ARG A:21 , PRO A:155 , MG A:213 , HOH A:2236
BINDING SITE FOR RESIDUE SO4 A 205
04
AC4
SOFTWARE
ARG A:66 , ALA A:90 , ALA A:91 , PRO A:123 , ASP A:124 , ARG A:125 , HOH A:2140 , HOH A:2142 , HOH A:2174 , HOH A:2237
BINDING SITE FOR RESIDUE SO4 A 206
05
AC5
SOFTWARE
ARG A:89 , ARG A:142 , HOH A:2238 , HOH A:2239
BINDING SITE FOR RESIDUE SO4 A 207
06
AC6
SOFTWARE
ARG A:109 , ARG A:153 , ARG A:160 , HIS A:161
BINDING SITE FOR RESIDUE SO4 A 208
07
AC7
SOFTWARE
ARG A:109 , ARG A:110 , ARG A:153 , ASN A:154 , ALA A:157 , ARG A:160 , HOH A:2208
BINDING SITE FOR RESIDUE SO4 A 209
08
AC8
SOFTWARE
ALA A:126 , GLU A:127 , ARG A:130 , HOH A:2176 , HOH A:2241 , HOH A:2242
BINDING SITE FOR RESIDUE SO4 A 210
09
AC9
SOFTWARE
GLU A:38 , SER A:44 , ILE A:45 , HOH A:2088 , HOH A:2224
BINDING SITE FOR RESIDUE MG A 211
10
BC1
SOFTWARE
GLU A:56 , ARG A:130 , MET A:133 , ALA A:134
BINDING SITE FOR RESIDUE MG A 212
11
BC2
SOFTWARE
ARG A:20 , SO4 A:205 , HOH A:2236
BINDING SITE FOR RESIDUE MG A 213
12
BC3
SOFTWARE
ARG A:58 , GLU A:61 , GLU A:62 , SER A:85
BINDING SITE FOR RESIDUE CL A 214
13
BC4
SOFTWARE
ARG A:20 , LYS A:24 , HOH A:2012 , HOH A:2049
BINDING SITE FOR RESIDUE CL A 215
14
BC5
SOFTWARE
PRO A:11 , LYS A:15 , ASP A:34 , ARG A:58 , GLY A:79 , GLY A:80 , GLY A:81 , PRO A:118 , LEU A:119 , ARG A:136 , PO4 A:204 , HOH A:2225 , HOH A:2226 , HOH A:2227 , HOH A:2228 , HOH A:2229 , HOH A:2233 , HOH A:2234 , HOH A:2235
BINDING SITE FOR RESIDUE S3P A 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SHIKIMATE_KINASE (A:58-83,A:58-83)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SHIKIMATE_KINASE
PS01128
Shikimate kinase signature.
AROK_MYCTO
58-83
1
A:58-83
AROK_MYCTU
58-83
1
A:58-83
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2iyya_ (A:)
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Folds
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)
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)
Protein Domains
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)
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)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Shikimate kinase (AroK)
(26)
Protein domain
:
automated matches
(10)
Mycobacterium tuberculosis [TaxId: 83332]
(10)
1a
d2iyya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2iyyA00 (A:2-170)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(16)
1a
2iyyA00
A:2-170
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (45 KB)
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