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Asym. Unit
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Asym.Unit (152 KB)
Biol.Unit 1 (146 KB)
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(1)
Title
:
HUMAN MITOCHONDRIAL BETA-KETOACYL ACP SYNTHASE COMPLEXED WITH HEXANOIC ACID
Authors
:
C. E. Christensen, B. B. Kragelund, P. Von Wettstein-Knowles, A. Hen
Date
:
05 Jul 06 (Deposition) - 06 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mitochondria, Mitochondrion, Lipid Synthesis, Fatty Acid Synthesis, Fatty Acid Biosynthesis, Beta-Ketoacyl Acp Synthase, Transit Peptide, Acyltransferase, Claisen Condensation, Kas, Cerulenin, Transferase, Homo Sapiens
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. E. Christensen, B. B. Kragelund, P. Von Wettstein-Knowles, A. Henriksen
Structure Of The Human Beta-Ketoacyl [Acp] Synthase From The Mitochondrial Type Ii Fatty Acid Synthase.
Protein Sci. V. 16 261 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: HEXANOIC ACID (6NAa)
1b: HEXANOIC ACID (6NAb)
2a: AMMONIUM ION (NH4a)
2b: AMMONIUM ION (NH4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6NA
2
Ligand/Ion
HEXANOIC ACID
2
NH4
2
Ligand/Ion
AMMONIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:346 , ALA A:347 , GLU A:394 , THR A:442 , ASN A:443
BINDING SITE FOR RESIDUE NH4 A1461
2
AC2
SOFTWARE
ASN B:346 , ALA B:347 , GLU B:394 , THR B:442 , ASN B:443
BINDING SITE FOR RESIDUE NH4 B1461
3
AC3
SOFTWARE
GLY A:153 , ALA A:208 , CYS A:209 , PHE A:248 , GLY A:446 , PHE A:447
BINDING SITE FOR RESIDUE 6NA A1460
4
AC4
SOFTWARE
GLY B:153 , ALA B:208 , CYS B:209 , ASP B:237 , PHE B:248 , GLY B:446 , PHE B:447
BINDING SITE FOR RESIDUE 6NA B1460
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036064 (F106I, chain A/B, )
2: VAR_OXSM_HUMAN_CCDS2643_1_01 (F106I, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036064
F
106
I
OXSM_HUMAN
Unclassified
---
A/B
F
106
I
2
CancerSNP
VAR_OXSM_HUMAN_CCDS2643_1_01
*
F
106
I
OXSM_HUMAN
Disease (Breast cancer)
---
A/B
F
106
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:200-216,B:200-216)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
OXSM_HUMAN
200-216
2
A:200-216
B:200-216
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Exons
(2, 4)
Info
All Exons
Exon 1.6e (A:-4-326 (gaps) | B:-4-326 (gaps))
Exon 1.7b (A:326-459 | B:326-459)
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All Exon Boundaries
1: Boundary 1.4a/1.6e
2: Boundary 1.6e/1.7b
3: Boundary 1.7b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000280701
4a
ENSE00000997589
chr3:
25831571-25831638
68
OXSM_HUMAN
-
0
0
-
-
1.6e
ENST00000280701
6e
ENSE00000997590
chr3:
25832481-25833488
1008
OXSM_HUMAN
1-326
326
2
A:-4-326 (gaps)
B:-4-326 (gaps)
302
302
1.7b
ENST00000280701
7b
ENSE00000997591
chr3:
25835583-25836025
443
OXSM_HUMAN
326-459
134
2
A:326-459
B:326-459
134
134
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2iwza1 (A:-4-296)
1b: SCOP_d2iwza2 (A:297-459)
1c: SCOP_d2iwzb1 (B:-4-296)
1d: SCOP_d2iwzb2 (B:297-459)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2iwza1
A:-4-296
1b
d2iwza2
A:297-459
1c
d2iwzb1
B:-4-296
1d
d2iwzb2
B:297-459
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2iwzA02 (A:304-459)
1b: CATH_2iwzB02 (B:304-459)
1c: CATH_2iwzA01 (A:-4-303)
1d: CATH_2iwzB01 (B:-4-303)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Human (Homo sapiens)
(12)
1a
2iwzA02
A:304-459
1b
2iwzB02
B:304-459
1c
2iwzA01
A:-4-303
1d
2iwzB01
B:-4-303
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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